Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00570 ATGAGTGAGCACTCTCATTCTCATTCTCGTTCGGTTCAAGGCAATGAAAAGAAGAACAATGTTGGTGGTGCCATGTTCAGGTTTGATGGTGGGAGAAAGAGGAAGAGGGATTTGGGGTCTGAACTTGATGGTGGTGGGAGCAGTAACAACAACATCATTTATGGCCTCAGAGAGAATCCCAAGAAGACCACGAGGTTTGTGCATTCCAATGCCACTTTGCAGCAGCAGCAACAGCTTGACAAGTTCTGCAAAGAATGTGGAAAAGGGTTTCCATCATTGAAGGCTCTTTGCGGTCACATGGCTTGTCACTCTGAAAAGGACAAGAACCGGTTTGAGGGGTTTACTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGATACCGAAACTTCTGCTCCAAGGAGGTCCAGGAGAATGAGGTTCAAGACCCTTAGcaacagcaacaacaataacaacCAGTCTCAATCTTCTTCTGTGTCAGAGGTTGAGCAGGAGCAGGAAGAGGTGGCTAGGTGTTTGATGATGTTGTATAAGGATTCTTGCCATAAGGGTCGTTTTGCTTTGGTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTGGAGGCTAAGTCATCTTCTCTTGAAACCAAGGTTACTATGATGATGAATAGTACTGGTAATGGTAAGAATTCTATGTCTAGTGCTTATGAGTTTGTGGAAGAGAAAAAGAAGCTGGAGCTGGAGGTGGATCACAAGTACAAGCACGAGGACATGAAGTTTAAGTCTGCTGAGATTTGCTATGATTCTGATAATTCAGATTCTGGGTACTTTAGATATGGTCCTAAGAAGGTTGACTCGGATGATTCAAATGATGGGTTTTTCAGGAATGAGGTTAAGTCTTCCAAAGTGGGGTACTTGTCTGGGTTTGAGGAGTATGATGTTGAATCCAGGAAGGTGCTGAGCAGAGGAAGAAGCAGGAGCACTGAATTCAAGAAATTTGCTTTGGAGGATTGGGAGAATGATGGAGAAGATGTTGCTGCAGCAAGGAAATTTGGTTCAAAGAAGTTCAAGAAATCCAACTATGATCAAAATTTAGGTGGGGTTTCTAGCAGGAAGATGGGGAATGGTTATACGAATGGTGGGAACAACAAGTATGAGTGCTTGACTAGTGAAAGGGACAATGGTTCTGATGATTCAGCTTATGAGAGTGATGAGAGCAGCACAGACACTGATTCTTATCCTGCTCCAAAGGCTCACAACAGGAACATTAGTGGTCAAAAGGGGAAGAAGAAGTTGAAGACAAAGAAAAGCAAGGCACATGAGTGCCCAATTTGCAACAAGATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCACAAAAGATCCCATTTTGTTGGAGGCTCTGAGGAGAACGCACTGGTGATAAGGCCAGGTGCTCCTAATGCCTTAGATCCATTATTTGGCAGGAGGTACAACTATAATCTTGGAATCATGTTCTTTTCCTTGCAAATGTTAGTTGGTTCAATGAATTTTTGTCTTCTAATGTTGGGGTCTTCCAATTTTTCATCCTCCTATGGAATGTACTGA 1563 0.4274 MSEHSHSHSRSVQGNEKKNNVGGAMFRFDGGRKRKRDLGSELDGGGSSNNNIIYGLRENPKKTTRFVHSNATLQQQQQLDKFCKECGKGFPSLKALCGHMACHSEKDKNRFEGFTEKQKLVMDSQSDTETSAPRRSRRMRFKTLSNSNNNNNQSQSSSVSEVEQEQEEVARCLMMLYKDSCHKGRFALVTESSDNNSVVLEAKSSSLETKVTMMMNSTGNGKNSMSSAYEFVEEKKKLELEVDHKYKHEDMKFKSAEICYDSDNSDSGYFRYGPKKVDSDDSNDGFFRNEVKSSKVGYLSGFEEYDVESRKVLSRGRSRSTEFKKFALEDWENDGEDVAAARKFGSKKFKKSNYDQNLGGVSSRKMGNGYTNGGNNKYECLTSERDNGSDDSAYESDESSTDTDSYPAPKAHNRNISGQKGKKKLKTKKSKAHECPICNKIFRSGQALGGHKRSHFVGGSEENALVIRPGAPNALDPLFGRRYNYNLGIMFFSLQMLVGSMNFCLLMLGSSNFSSSYGMY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00570 520 MobiDBLite consensus disorder prediction 355 382 - -
Cca06g00570 520 Pfam C2H2-type zinc finger 83 105 - -
Cca06g00570 520 Pfam C2H2-type zinc finger 432 455 - -
Cca06g00570 520 MobiDBLite consensus disorder prediction 355 429 - -
Cca06g00570 520 SUPERFAMILY beta-beta-alpha zinc fingers 82 455 IPR036236 -
Cca06g00570 520 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Cca06g00570 520 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 471 - -
Cca06g00570 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 433 455 IPR013087 -
Cca06g00570 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Cca06g00570 520 MobiDBLite consensus disorder prediction 142 163 - -
Cca06g00570 520 MobiDBLite consensus disorder prediction 116 163 - -
Cca06g00570 520 MobiDBLite consensus disorder prediction 1 32 - -
Cca06g00570 520 ProSitePatterns Zinc finger C2H2 type domain signature. 435 455 IPR013087 -
Cca06g00570 520 SMART c2h2final6 433 455 IPR013087 -
Cca06g00570 520 SMART c2h2final6 81 103 IPR013087 -
Cca06g00570 520 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00570 Cca-Chr6 16785159 16787004 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g00570 zf-C2H2_6 1.1e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00570 06 16785159 16787004 Cca06g00570 06 16785159 16787004 ECH