Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00568 ATGGTGAAGATTTGCTGCATTGGAGCTGGCTATGTTGGTGGTCCAACCATGGCCGTGATTGCCTTGAAGTGTCCTGAGATTGAGGTGGCTGTGGTGGACATTTCCACGCCGCGAATCAGTGCGTGGAACAGTGACCACCTCCCTATATACGAGCCTGGCCTTGATGATGTGGTGAAGCAGTGTAGGGGGAAGAATCTGTTCTTCAGCACTGATGTGGAGAAGCATGTTGCCGAGGCTGACATAGTCTTTGTGTCGGTGAACACGCCGACAAAGACTCAGGGCCTTGGAGCCGGCAAGGCTGCCGATCTAACATACTGGGAGAGTGCTGCCAGGATGATCGCTGATGTTTCCAAGTCAGACAAGATCGTGGTTGAGAAATCAACGGTGCCGGTGAAAACAGCCGAGGCAATTGAGAGGATTCTGACTCACAATAGGAAGGGCATCAATTTCACAATTCTATCAAACCCAGAGTTCCTTGCTGAGGGTACAGCAATTGCAGATTTGTTTAAGCCTGATAGAGTCCTCATTGGAGGCAGGGAAACCCCAGAGGGTCAAAAGGCTATTCATGCTTTGAGAGATGTTTATGCTCATTGGGTTCCTGTGGACAGAATCCTTTGCACCAATTTGTGGTCTGCTGAACTCTCAAAGCTTGCTGCCAATGCTTTCTTGGCTCAGAGGATCTCCTCTGTGAATGCCATGTCAGCACTTTGTGAGGCAACTGGTGCTGATGTCTCACAGGTTTCCCACTCAATTGGCACAGACTCAAGAATTGGACCAAAGTTCTTGAATGCTAGTGTTGGTTTTGGTGGATCATGCTTCCAGAAGGACATATTGAACCTGGTCTATATCTGTGAGTGCAATGGCCTTCCTGAGGTGGCCAATTACTGGAAACAGGTGATCAAGGTGAATGACTACCAGAAAAACCGGTTTGTGAACCGGGTGGTGTCGTCCATGTTCAACACAGTCTCAGGGAAGAAGATTGCAATTCTGGGGTTTGCTTTCAAGAAGGACACTGGTGACACTAGGGAAACCCCAGCAATTGATGTGTGCAAGGGGCTTTTGGGGGACAAGGCTAAGTTGAGCATATATGATCCTCAGGTTTCTGAAGATCAAATCTTGAGGGATCTTGCAATGAAGAAGTTTGATTGGGACCACCCTGCACATCTTCAGCCATTGAGTCCAACTTCCAACAAGCAACAAATATCTGTGGTTTGGGATGCATATGAGGCAATCAAGGATGCACATGGTATTTGCATTATGACTGAGTGGGATGAGTTCAAGAACCTTGATTACAAAAAGGTTTATGACAACATGCAGAAGCCTGCATTCGTTTTTGATGGCCGCAATGTTGTGGATGTTAAAAAGCTGAGGGAAATTGGTTTCATTGTTTACTCCATTGGCAAGCCTCTAGATGCATGGCTCAAGGACATGCCTGCAGTGGCATAA 1446 0.4737 MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISTPRISAWNSDHLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNRKGINFTILSNPEFLAEGTAIADLFKPDRVLIGGRETPEGQKAIHALRDVYAHWVPVDRILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHSIGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVSEDQILRDLAMKKFDWDHPAHLQPLSPTSNKQQISVVWDAYEAIKDAHGICIMTEWDEFKNLDYKKVYDNMQKPAFVFDGRNVVDVKKLREIGFIVYSIGKPLDAWLKDMPAVA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00568 481 Gene3D - 241 479 - -
Cca06g00568 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Cca06g00568 481 Gene3D - 1 208 - -
Cca06g00568 481 PIRSF UDPglc_DH_euk 1 481 IPR028356 GO:0003979
Cca06g00568 481 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 481 IPR028356 GO:0003979
Cca06g00568 481 Gene3D - 209 240 - -
Cca06g00568 481 PIRSF UDPglc_GDPman_dh 2 468 IPR017476 GO:0016616
Cca06g00568 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Cca06g00568 481 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 200 IPR036291 -
Cca06g00568 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 452 IPR014027 GO:0016616|GO:0051287
Cca06g00568 481 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 481 - -
Cca06g00568 481 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Cca06g00568 481 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 464 IPR036220 -
Cca06g00568 481 SMART UDPG_MGDP_dh_C_a_2_a 328 453 IPR014027 GO:0016616|GO:0051287
Cca06g00568 481 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 449 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00568 Cca-Chr6 16741208 16744128 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00568 06 16741208 16744128 Cca06g00568 06 16741208 16744128 ECH
Cca06g00568 06 16741208 16744128 Cca09g00280 09 6611388 6612782 ECH