Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00560 ATGGCATCGCAAATCCTCCTCCGCACGCGCTCCCTCTTCCCCAAGCACCCCTCTCTCCTCAAAACCATCACCACATTCCCCTCCCTCTCGCAGGAGCCCCAGCTAGCGGACCCCACCCCGCTCCCTCCCAACCCCGCCACCGGAAGCCCTCTCTACCACCAGAACTGGCGCAACCCAATCCCCTCCGCCGGCTCCAACGCCCTCGCCCCCCTCGGCTCCCACCGCCGCGACGACTCCGACTCCCGCACCCTCCTCGACACCTTCGCCAACTCCATCGCCTCCCAGGACTGGGCCCAAGTGAGGGACCACTTCCAGGCCTGGGTCCACTCCCTCGACAAGCACGGCAAGCCCAATAGCCCCGATGTTGGCCTCTTCAACCACTACCTCAGGGCCAACCTCATGCTCGGTGCCTCCGCCGCTGACCTCCTTGATATCCTCGCCCAGATGCCCCAATTCGGTGTTGCCCCCAATACGGCGTCGTATAACCTCGTCCTCAAGGCCATGTGCCAGGCCAACGAAACCCTCGCCGCTGATAAGCTCCTCCAACGGATGCTGCAGACAGGAAATGAAGCTCAACCTGATGACGAATCATATGAATTGGTCATTGCAATGCTCTTTTCCACAGACCAGTTCGATACTGCATTCAAATATATAGATTTAGCTTTGAAATCTGGTTGTGTGTTGTCAATGAAGATATTTATGGCCTGTGTGCGGAGATGTGTCAATAAGGGAAGGCTTGATACGTTGGTGACAATAATTGAAAGGTGCAGGACAACTGATCAAAACAAAGCTCTTTGCCCCCAGTGGGACTGGTGCAATTTTATTGTTGAAATTGCAACTCAAGAGGATAATAGCAAGTTAGCTTTTTATGGCCTGGAGTTTATGGCTAGATTGATTGTAAGGGGTGAACGTGAAAAACCCCCTATGTTTATTTCTGTAGATGAAGGTTTAGTTCTGTCTGCTATTTTGACTGCTGGTAGAACCTATAATTCCGAGCTGTTAGTGGCATCATGGGCTGTTTTGGACCGTTCCTTGCGTAAAAAGAAAACTCCTAATCCAGAGTCATATCTCGGAAAGATATATGCCCTTGCATCATTGGGGAATCTACAAAAGGCTTTTGGTACTCTGAATGAATATGAGTCAGTTTATGGAGACTCCAGTCAAGAAGCTGAAGACTTGTTCTGCCCATTTACCTCATTACATCCATTGGTTGTGGCATGCTCCAAGAAGGGTTTTGAGACTCTAGATAATGTTTATTTTCAACTGGAGAATTTAAATCGTGCAGAGCGACCTTATAAATCTCTTGCTGCACTAAATTGCATCATTTTAGGATGTGCAAACATATGGGATCTTGATAGAGCTTACCAAACTTTTGAATCAATTGGATCTACTTTTGGGTTGAGCCCTGATATTCATTCATACAATGGACTGATGCATGCCTTTGGAAAGCTCAAGAAGACCCATGAAGCTTCAAGGGTGTTTGAGCACTTAGTCAGTTTGGGTCTCAAGCCTAATGCCAAATCTTACTCTCTGCTTGTTGATGCCCACCTGATTAACCGTGATGTAAAATCTGCCCTGGCAGTGATTGATGATATGAGAGCTGCTGGATTTGAACCATCAAAAGAGATGCTAAAAAAGGTCAGACGGCGATGCATGCGAGAAATGGACTATGAAAGTGATGACCGAGTGCAATCACTGGCCAATTCTCTGAATTATAGAATGGGTGCAGAATCCCGGCGAGACATTCTGTTTAATCTTAATTACAGTCTGGGTTATGCTTGA 1782 0.4826 MASQILLRTRSLFPKHPSLLKTITTFPSLSQEPQLADPTPLPPNPATGSPLYHQNWRNPIPSAGSNALAPLGSHRRDDSDSRTLLDTFANSIASQDWAQVRDHFQAWVHSLDKHGKPNSPDVGLFNHYLRANLMLGASAADLLDILAQMPQFGVAPNTASYNLVLKAMCQANETLAADKLLQRMLQTGNEAQPDDESYELVIAMLFSTDQFDTAFKYIDLALKSGCVLSMKIFMACVRRCVNKGRLDTLVTIIERCRTTDQNKALCPQWDWCNFIVEIATQEDNSKLAFYGLEFMARLIVRGEREKPPMFISVDEGLVLSAILTAGRTYNSELLVASWAVLDRSLRKKKTPNPESYLGKIYALASLGNLQKAFGTLNEYESVYGDSSQEAEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENLNRAERPYKSLAALNCIILGCANIWDLDRAYQTFESIGSTFGLSPDIHSYNGLMHAFGKLKKTHEASRVFEHLVSLGLKPNAKSYSLLVDAHLINRDVKSALAVIDDMRAAGFEPSKEMLKKVRRRCMREMDYESDDRVQSLANSLNYRMGAESRRDILFNLNYSLGYA 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00560 593 MobiDBLite consensus disorder prediction 57 80 - -
Cca06g00560 593 Pfam Pentatricopeptide repeat domain 120 168 IPR002885 -
Cca06g00560 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Cca06g00560 593 Gene3D Tetratricopeptide repeat domain 93 290 IPR011990 GO:0005515
Cca06g00560 593 Gene3D Tetratricopeptide repeat domain 334 579 IPR011990 GO:0005515
Cca06g00560 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Cca06g00560 593 Pfam PPR repeat family 469 515 IPR002885 -
Cca06g00560 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Cca06g00560 593 PANTHER OS07G0599000 PROTEIN 4 593 IPR044605 -
Cca06g00560 593 MobiDBLite consensus disorder prediction 30 49 - -
Cca06g00560 593 TIGRFAM PPR: pentatricopeptide repeat domain 472 506 IPR002885 -
Cca06g00560 593 TIGRFAM PPR: pentatricopeptide repeat domain 160 188 IPR002885 -
Cca06g00560 593 TIGRFAM PPR: pentatricopeptide repeat domain 508 540 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00560 06 16640812 16646956 Cca06g00560 06 16640812 16646956 ECH