Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00542 ATGACACCAGATTTTCACCTCTTGTTATTCCCTGAACTAGCTCAGCCCCCTATTCTGAGTTTCCAAGCCGCTTTATTCATCTTCCTTGTAACACTCCTCTTGGCGTTTTATTTCACTCCCGGTGGGCTCGCATGGGCTCTGACTAAGTCCATTATCCCGGGCCCAGTCTCGGCCCTCCTCGGGGCCTTCACCGGCCCAACCCCGCACCGGGCTTTAGCCAAGCTCGCCCGGAGCCACCATGCGGAGAAGCTCATGGCCTTCTCCATCGGCCTGACCCGGTTCGTGATCTCCAGCGAACCGGAAACGGCCAAGGAAATTCTCGGCAGCACTGCTTTCGCTGATAGGCCGGTGAAGGAGTCTGCTTACGAGCTTCTCTTCCACCGTGCAATGGGGTTCGCACCGTACGGAGAGTACTGGAGGAGCCTCAGGAGAATCTCCGCGCTTCACCTTTTCTCCCCCAAGAGGATTTCCTCGTTTGAAAAGTTCAGGCGCCAGGTGGGGGTCAAAATGGTTGAGGAGGTGAAACGGGTTATGAGTGTAAACGGACACGTGGAGGTTAAGAGGGTGCTCCACTTTGGCTCCTTGAACAATGTCATGATGACGGTGTTTGGGAAGTGTTACGAGTTTTTTGAAGGGGAGGGGGTTGAGCTTGAGGGTCTGGTGAGCGAAGGGTATGAGCTGTTGGGAGTTTTTAACTGGAGCGACCATTTTCCGGTTCTGGGGTGGTTGGATTTGCAGGGTGTGAGGAGGAGATGTAGGAGTTTGGTTCAGAAGGTTAATGCTTTTGTTGGGAGGATTATCGAGGAACATAGAATCAAGAGGGTGAATGGTGAGTATGTGAAGGATGAAGGAGTGGGTGACTTTGTAGATGTGTTGCTTGATTTGGAGAACGAAAGTAAACTCAGTGAGCCTGATATGATCGCTGTTCTTTGGGAAATGATATTCAGGGGTACGGACACGGTGGCGATATTGCTGGAGTGGATCTTGGCGAGGATGGTTCTTCATCCAGAGATACAAGCAAAGGTGCAGAGTGAAATAGACAGTGTTTGTGGGTCGAAGGTTGTTTCGGATTCCGATGTTGCCAACATGCGTTACCTCCAATGCATTGTGAAGGAGGCTCTGCGGGTGCACCCACCTGGGCCTTTGCTATCGTGGGCTCGTTTGGCGGTGCATGATGTTACGGTGGGCGAGAATCATATTCCAAAGGGAACCACCGCGATGGTGAACATGTGGGCCATAACGCATGACGAGAAAGTGTGGGCTGAACCGGAGAAGTTTAAACCGGAGCGGTTCATGGAGGATGACGTGAGCATAATGGGTTCTGATTTGCGTTTGGCACCGTTCGGGTCTGGGCGAAGGGTGTGTCCTGGGAAGGCTTTGGGTTTGGCCTCGGTTCATCTTTGGCTCGCTCAGTTGCTTCAGAGTTTTCGTTGGGTTCCTTCGGATGGTGCCACTGTGGATTTGGAAGAGTGTCTTAAGCTGTCTATGGAGATGAAAAAGCCACTGGCTTGTAAGGCTGTGCCTAGGGTTGTTGTTTGA 1539 0.5218 MTPDFHLLLFPELAQPPILSFQAALFIFLVTLLLAFYFTPGGLAWALTKSIIPGPVSALLGAFTGPTPHRALAKLARSHHAEKLMAFSIGLTRFVISSEPETAKEILGSTAFADRPVKESAYELLFHRAMGFAPYGEYWRSLRRISALHLFSPKRISSFEKFRRQVGVKMVEEVKRVMSVNGHVEVKRVLHFGSLNNVMMTVFGKCYEFFEGEGVELEGLVSEGYELLGVFNWSDHFPVLGWLDLQGVRRRCRSLVQKVNAFVGRIIEEHRIKRVNGEYVKDEGVGDFVDVLLDLENESKLSEPDMIAVLWEMIFRGTDTVAILLEWILARMVLHPEIQAKVQSEIDSVCGSKVVSDSDVANMRYLQCIVKEALRVHPPGPLLSWARLAVHDVTVGENHIPKGTTAMVNMWAITHDEKVWAEPEKFKPERFMEDDVSIMGSDLRLAPFGSGRRVCPGKALGLASVHLWLAQLLQSFRWVPSDGATVDLEECLKLSMEMKKPLACKAVPRVVV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00542 512 PANTHER CYTOCHROME P450 78A5 1 509 - -
Cca06g00542 512 Gene3D Cytochrome P450 49 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 SUPERFAMILY Cytochrome P450 63 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 Pfam Cytochrome P450 66 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PANTHER CYTOCHROME P450 78A7-RELATED 1 509 - -
Cca06g00542 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Cca06g00542 512 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00542 512 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00542 Cca-Chr6 16284708 16286839 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00542 06 16284708 16286839 Cca06g00542 06 16284708 16286839 ECH