Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00541 ATGGATCGGAGCTCTTTCTCCACCGGAACCCGAAAATCCCGACCAAATTCCGACATATACTCAACCTTCGTCGTCCATGACGACGGCGAAGACGACGGAGAATCCTACCGCCGGCGGAAATCCGGCGGCGCGCAACCGAAGGAAGATCTCTACGCTACAATGGTCTacaaagacaacggccacgacgacgacgacgatgaATACTCCTCTCTCCCTCCGCTCCTCAAGCGCCTCCCCAAGGACTTcggcggcggggcgtcgatggactacgacgaagacgacgacgacggcgccgGTGATTTCGGCACCATGATCGTGAAGAGCGACCGGAGCCGGCCGCGAGATCGGCCTTCTTCCGGTTTGGCTTCGCCGACGGGGACTTGGAAGGCTCGGAGCTCGGCTCAGGCGAGTGCTCTGAACAGATTCGGTGGcggcgacgaggacgacgaggacgacggcgGAGGATTCTCAACGTTCGTCGTGAAGCCCGTCGAGAGAGAGTCGGTGAGCGGAACCATGGTGCGACGGACcggtggaggaggaggaggcggcggcggcggcATCGGTTCGACGATGGAGAGAGCGGTGGCAAGCATGCAAGGGATGGGAGATTTTGGATTAGGAAAGCAGAAGAAAGGGAGTGGATCCTCGCAGAACGATGAGGGAAGGCATCATTCAATAGCGAAGGTTTCGTCGAGTTCGATCCCTGAAAGTGTTACCAGAGAGGACCCTACGATTAAATACGAATTGCTCAATGAACTTGGGAAGGGGTCCTATGGAGCTGTTTACAAAGCAAGGGATTTGAGAACCTCGGAGATGGTTGCTATTAAAGTAATATCGTTATCTGAAGGGGAGGAGGGGTATGAGGAAATCCGTGGTGAGATTGAAATGTTACAACAATGTAATCATCCAAATGTTGTCCGTTATCTTGGAAGCTATCAAGGAGAAGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTTGCTGATCTGATGAGTGTGACTGATGAAGCACTGGATGAGGGTCAAATAGCATATATCTGTAGAGAAGCACTGAAGGGTCTTGATTATTTGCACTCAATTTTTAAAGTCCATAGAGACATTAAAGGTGGGAATATCTTATTAACTGAACAAGGAGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCGCAGCTGACAAGGACTATGTCAAAGCGCAATACGTTCATTGGAACCCCTCACTGGATGGCTCCGGAAGTTATTCAAGAAAGTCGCTACGATGGAAAGGTAGATGTTTGGGCTCTTGGTGTGTCTGCTATTGAAATGGCTGAGGGTGTTCCTCCAAGATCAGATGTACATCCAATGAGGGTTTTATTCATGATATCAATTGAACCAGCTCCAATGCTTGAGGATAAAGAAAAATGGTCTCTATATTTCCATGATTTTGTTGCAAAGTGCCTAACAAAAGAACCTCGTCTCCGCCCTACAGCATCTGAGATGTTGAAGCACAAATTCTTTGAAAAGTGGAAAAGTGGATCTGCTGCAATGTTGCCAAAACTGGAAAAGGCAAGGCAAATCAGGGCTTCAATGGCTTTGCAGGCCCAAACTCTTGCACCAGCAGCATCAGAAGATCAGTTAGCTTCAAATTTAAACGATGAATATGAAAATACTATTCCATCCGGATCTCATAACGTTGGTGTTGAGGGAGCTGCTAATCTCTCATCACATGGCACTGTAAGGAAGCTACATAAGGTAGAAGATGTAGACACGAATGAAGGCAACTTTGGCACTTTTATAGTCCATGGAGATGAATTAAATCAGACCACACAGGATGCAGATTCTGCAGTTTCCACTTCTGCTCTGACCAGTGGCACAGGAGGCAGATTGGCCGACTCTAGGATTGAAAGTCAGAAAGTTGGTCTTCTGAACACCGTCTCTTTTAGAGAACCTAGTGCTGCGACCAATACCATTCAATCATCTTTACCTTATGTTAGTAATTTAACTGAGCAGACCCTCAAAAAAGGTAGTCATCGAGCACAAGCTGGAATTGGTAATGATATAAACAATAGCTTATTCAAGGGTGAAACAGTCAGCCGTAAAGCATTTGCTTTACAAGATAAGCTTTGGTCCATTTATGCTGCTGGTAACACAGTGCCCATCCCATTCTTAAGGGCAACAGATATATCACCTATTGCTCTCCTGTCAGACAATGTACTTGGTGTCATGCAACAGGATACCAGTGGAGCTGGAACAGTGGAAGCATTGCAAGAGCTTTTTAGCGGCGATGGACAATCCAAAAAGGGCCGGAGAGGACTAAATGAGCAGATGCCTCTTCCTCCAAGCATTTACCAAAGATTGACGTCGAGTTCTACTCTAATGAATTTGGCACAGGCTTTAGCTTACCATAAGATGTGTTACGAAGATATGCCACTTCAGGAGCTGCAAGCAACCCAGGAGCAGCGAACTATTCAAAATCTCTCCGACACACTTAGAACCATTCTTCGGTTGTAG 2499 0.4362 MDRSSFSTGTRKSRPNSDIYSTFVVHDDGEDDGESYRRRKSGGAQPKEDLYATMVYKDNGHDDDDDEYSSLPPLLKRLPKDFGGGASMDYDEDDDDGAGDFGTMIVKSDRSRPRDRPSSGLASPTGTWKARSSAQASALNRFGGGDEDDEDDGGGFSTFVVKPVERESVSGTMVRRTGGGGGGGGGGIGSTMERAVASMQGMGDFGLGKQKKGSGSSQNDEGRHHSIAKVSSSSIPESVTREDPTIKYELLNELGKGSYGAVYKARDLRTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMSVTDEALDEGQIAYICREALKGLDYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSDVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPTASEMLKHKFFEKWKSGSAAMLPKLEKARQIRASMALQAQTLAPAASEDQLASNLNDEYENTIPSGSHNVGVEGAANLSSHGTVRKLHKVEDVDTNEGNFGTFIVHGDELNQTTQDADSAVSTSALTSGTGGRLADSRIESQKVGLLNTVSFREPSAATNTIQSSLPYVSNLTEQTLKKGSHRAQAGIGNDINNSLFKGETVSRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGVMQQDTSGAGTVEALQELFSGDGQSKKGRRGLNEQMPLPPSIYQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00541 832 MobiDBLite consensus disorder prediction 54 71 - -
Cca06g00541 832 Gene3D Transferase(Phosphotransferase) domain 1 245 539 - -
Cca06g00541 832 Pfam Protein kinase domain 248 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00541 832 MobiDBLite consensus disorder prediction 24 45 - -
Cca06g00541 832 MobiDBLite consensus disorder prediction 1 20 - -
Cca06g00541 832 MobiDBLite consensus disorder prediction 203 242 - -
Cca06g00541 832 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 190 822 - -
Cca06g00541 832 CDD STKc_MAP4K3_like 247 502 - -
Cca06g00541 832 ProSitePatterns Protein kinases ATP-binding region signature. 254 277 IPR017441 GO:0005524
Cca06g00541 832 SMART serkin_6 248 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00541 832 MobiDBLite consensus disorder prediction 1 191 - -
Cca06g00541 832 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 190 822 - -
Cca06g00541 832 MobiDBLite consensus disorder prediction 118 139 - -
Cca06g00541 832 SUPERFAMILY Protein kinase-like (PK-like) 247 503 IPR011009 -
Cca06g00541 832 ProSiteProfiles Protein kinase domain profile. 248 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00541 Cca-Chr6 16223078 16242315 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Cca06g00541 Pkinase 1.8e-69 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00541 06 16223078 16242315 Cca06g00541 06 16223078 16242315 ECH