Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00537 ATGGCTTGTCTTTCCTTTCCCCAGTTTCTCTCACTTCCCAGGTACCACTTGACTTGGTCCAATTGTTGTACTTCTTTTAACACAGTGCAACTTACGGCACTTAGGTCTGGGTATAAATGGGGTCATGTGGCAATGGCTAGGAAAAAGGCTTCTCTAGACTCTGCTATAGAAGAAGAGCCCAGTGACAATGAATCTGTGGTGGAAAAGAAGACAACTAGGTCATCTAAAACTAAGAGGGCCACGGCGAGGACGAGGAAGAAAACAAAAGATGAGTCTTCTGAAGGGAAGGCTGATTTGTTGGCAGATGGAGATGATGCTTCCATTGGAGAAATCTCATCTGCCTCTAGTGATGATTTGAAGAAAACACGAAGGACTCGGCGAAAGGATGTATCAAATTCTGCTGGCTTGGAAGAAAAGAAGGAAGTAAAGGAAGTGAAAAAGGTTAGAAGACGAAGGAAAACTGAAGAGGAGAATTTAATTGTAGAGTATAAAGGTAGTGAAGCTGAAATCAGTGACCAAGATGAGCCTTCATTTCTTGAAAATGTGGAGGATGATAGTGACAGTGGCTTGGAACTGATAAAAGATGATGGAGAGGATATTAGCTTTACTTATGGATGGCCTCCTCTTGTGTGTTGCTTTGGAGCCGCACAGCATGCTTTTGTGCCTTCGGGGAGACCCGCCAATAGGCTTATAAATCATGAAATCCATGAAAGCATGAAGGATGCCTTATGGAGCCCTGAAAAGTTTGTTAGGTCTCCTGGGGGCTCCGCTGGTAGTGTTGCCATTGCTCTTGCTACATTGGGTGGCAAGGTTGCTTTCATGGGAAAACTTGCAGATGACGATTATGGTCAAGCAATGCTGTACTATATGAATGTGAATAAAGTCCAAACCCGGTCAGTACGTATTGATAGTAAAAGGGCAACGGCTGTATCGCTGATGAAGATTGGTAAAAGGAGTCGACTCAAAATGAGTTGTGTAAAATCCTGTGCTGAAGATAGTTTGACGAAGTCGGAGATAAATGTTGATGTGCTGAAAGAGGCAAAAATGTTCTACTTCAATACACATCCCCTGCTTGATCGTAACATGAGGTCAACTACATTGCAAGCCATCAAGATTTCCAAGCATTTTGGAGGGGTTGTTTTCTATGATCTAAACCTTCCTATGCCGCTATGGCACTCTAGGGAAGAAACTATGATGTTCATTCAGCGAGTGTGGAATCTTGCGGACATTATTGAGGTCACTAAACAAGAACTAGAATTCTTATGTGGGATCACGCCATCTGAAGAATTTGACACCAAAAATAATGCCAGGTCGAAGTTTGCTCATTATGAACCTGAAGTGGTTGCCCCACTTTGGCACGAAAATCTTAAGATTTTATTTGTAACTAATGGAACTTCCAAGATACATTACTACACAAAAGAGCTCAATGGTGCTGTTCTTGGGATGGAGGATGCTCCAATTACTCCATTCACTTCTGATATGTCAGCAAGTGGAGATGGCATTGTTGCAGCTCTCATGCGAATGTTGACTGTTCAACCTGATTTGCTAACTGATAAAGGATACCTGGAACATTCCATCAAGTATGCAATTGATTGCGGGGTTATCGATCAATGGATACTCGGTCGGGTACGGGGTTTTCCTCCAGATGAAGATATAGAGGACATAACTGCTGATCCAAATGGTATTAGGACTATTTCAGAAGAAGAATACCGCACAGTATTAAGGACTGTTAGTGAGTGA 1740 0.4253 MACLSFPQFLSLPRYHLTWSNCCTSFNTVQLTALRSGYKWGHVAMARKKASLDSAIEEEPSDNESVVEKKTTRSSKTKRATARTRKKTKDESSEGKADLLADGDDASIGEISSASSDDLKKTRRTRRKDVSNSAGLEEKKEVKEVKKVRRRRKTEEENLIVEYKGSEAEISDQDEPSFLENVEDDSDSGLELIKDDGEDISFTYGWPPLVCCFGAAQHAFVPSGRPANRLINHEIHESMKDALWSPEKFVRSPGGSAGSVAIALATLGGKVAFMGKLADDDYGQAMLYYMNVNKVQTRSVRIDSKRATAVSLMKIGKRSRLKMSCVKSCAEDSLTKSEINVDVLKEAKMFYFNTHPLLDRNMRSTTLQAIKISKHFGGVVFYDLNLPMPLWHSREETMMFIQRVWNLADIIEVTKQELEFLCGITPSEEFDTKNNARSKFAHYEPEVVAPLWHENLKILFVTNGTSKIHYYTKELNGAVLGMEDAPITPFTSDMSASGDGIVAALMRMLTVQPDLLTDKGYLEHSIKYAIDCGVIDQWILGRVRGFPPDEDIEDITADPNGIRTISEEEYRTVLRTVSE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00537 579 SUPERFAMILY Ribokinase-like 238 554 IPR029056 -
Cca06g00537 579 CDD bac_FRK 209 543 - -
Cca06g00537 579 PANTHER HEXOKINASE FAMILY MEMBER 110 574 - -
Cca06g00537 579 Pfam pfkB family carbohydrate kinase 245 533 IPR011611 -
Cca06g00537 579 Gene3D - 210 561 IPR029056 -
Cca06g00537 579 MobiDBLite consensus disorder prediction 116 135 - -
Cca06g00537 579 MobiDBLite consensus disorder prediction 52 75 - -
Cca06g00537 579 MobiDBLite consensus disorder prediction 52 135 - -
Cca06g00537 579 PANTHER FRUCTOKINASE-LIKE 2, CHLOROPLASTIC 110 574 - -
Cca06g00537 579 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00537 Cca-Chr6 16118189 16122105 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00537 06 16118189 16122105 Cca06g00537 06 16118189 16122105 ECH