Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00520 atgggtaggggaaaggtggagctcaagaggattgagaacaagataaaccgtcaagtcacatttgcaaagagaaggaacggtttgctcaagaaggcttatgaactctctgtcctctgtgatgctgaggttgccctcattatcttctccaaccgtggcaaactctatgaattctgcagtggccctagCATGGCCAAGACACTGGAACGTTACCACAGATGCAGTTATGGAGCCTTGGAAGTACACCATCAACCTGAAATAGAGACACAGAGGCGATACCAAGAGTATCTGAAGCTAAAATCTAAAGTTGAGCAACTACAACAAACACAAAGAAACCTCCTTGGAGAAGAATTGGAGCACTTAGATATTAAGGAGCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCCTTGAAACAAATCAGATCTAACAAGACACAACAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTACTGGAAACTAATAGTATCCTAAGGAACAAGTTGGAGGAAATTAATGCAACCCTTCAACCAACATGGGAAGCTAGGGAGCAAAATGCACCCTACAATTGCCACCCTCCACAATCAGAGGGATATTATGAAACAGCACATTGCAACAGTACATTGAGAATCGGCTATGATTCTTCAGTGTTAAATGAAGCAGGTACCTCAGGCCAAAACGCCAGTGAATTCATGCATGGATGGATGGACTGA 723 0.3167 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMAKTLERYHRCSYGALEVHHQPEIETQRRYQEYLKLKSKVEQLQQTQRNLLGEELEHLDIKELEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNSILRNKLEEINATLQPTWEAREQNAPYNCHPPQSEGYYETAHCNSTLRIGYDSSVLNEAGTSGQNASEFMHGWMD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00520 240 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Cca06g00520 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Cca06g00520 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca06g00520 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca06g00520 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca06g00520 240 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00520 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cca06g00520 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca06g00520 240 Coils Coil 95 115 - -
Cca06g00520 240 PANTHER MADS BOX PROTEIN 1 229 - -
Cca06g00520 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca06g00520 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca06g00520 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 229 - -
Cca06g00520 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00520 240 Coils Coil 122 145 - -
Cca06g00520 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00520 Cca-Chr6 15692679 15705029 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca06g00520 K-box 1.6e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00520 06 15692679 15705029 Cca06g00520 06 15692679 15705029 ECH
Cca06g00520 06 15692679 15705029 Cca07g02282 07 51330477 51337703 ECH
Cca06g00520 06 15692679 15705029 Cca09g00339 09 7947251 7954547 ECH