Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00519 atgggaaggggtagggtacagctgaagaggatagagaacaagatcaatcgccaggtaactttttccaaaaggagaggtgggttgctcaagaaagctcatgagatctctgtactctgtgatgctgaggttgctttgattatcttctccCACAAAGGAAAGCTCTTTGAATATGCAACTGATTCATGTATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGGCAGCTAGTAGCAAATGATTCTGAGACTCAGGGAAACTGGACCATTGAATATACTCGACTCAAGGCTAAGATTGACCTTTTGCAAAGAAACCACAGGCACTACATGGGAGAAGATTTGGTTTCAATGAGCCTCAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCACTGAAAAACATCCGCACAAGGAAGAACGATCTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAAAGATACAAGAGCAGAATAACATCCTCGCAAAGAAGATCAAGGAGAAGGAGCAAGCTGTAGCACAGCAGGCTGCACAATGGGAGCAGCCAAATTACAGGGTTGACACATCTTGCTTACCACAGCAACAACCCCCTCCCAGTTTGAACATAGGTGGCAATAGTTACCATCAGGAGGCACCAGAACTAGGAAGGAACGGTCTTGACCTGACCCTGGAACCACTGTACTCATGCCACCTTGGATGCTTCTGA 726 0.365 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIIFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLVSMSLKELQSLEQQLDTALKNIRTRKNDLMYESISELQKKEKKIQEQNNILAKKIKEKEQAVAQQAAQWEQPNYRVDTSCLPQQQPPPSLNIGGNSYHQEAPELGRNGLDLTLEPLYSCHLGCF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00519 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca06g00519 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00519 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cca06g00519 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Cca06g00519 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca06g00519 241 Coils Coil 118 145 - -
Cca06g00519 241 Coils Coil 151 181 - -
Cca06g00519 241 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00519 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca06g00519 241 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 216 - -
Cca06g00519 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Cca06g00519 241 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Cca06g00519 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca06g00519 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca06g00519 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca06g00519 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00519 Cca-Chr6 15651090 15655890 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca06g00519 K-box 3e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00519 06 15651090 15655890 Cca06g00519 06 15651090 15655890 ECH
Cca06g00519 06 15651090 15655890 Cca07g02283 07 51349164 51359559 ECH
Cca06g00519 06 15651090 15655890 Cca09g00342 09 8045052 8060440 ECH