Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00511 ATGGCTTTTATGTCGGAGGTCAACATGAGCTTCTCTCACTACATGGATGATGAATATGAGAAACTATTCCGGAGAATGAATCCTCCCAGGGTTGTAATCGATAATGAAGCCTGCAAGAATGCTACTGTTATAAGGGTCGACAGTGCAAACAAGCATGGAATTCTTCTTGAAGTTGTACAAATTCTCACTGATCTAAACCTCATCATAACCAAGGCTTACATATCTTCTGATGGTGGATGGTTCATGGATGTTTTTAATGTTACTGACCAAGATGGAAACAAGGTTATTGATGAAGCCATTTTGGATTACATTAGAAAGTCTCTTGGTCCCGAATCTTGTGTTACATCTCCCATGAGATCTGTTGGGGTTAAGCAAACAATGGACCACACTGCAATTGAGCTTATGGGGAGTGATAGACCAGGATTGCTTTCAGAAGTTAGTGCTGTTCTGACCAACCTGAAGTGTAATATAGTGAATGCAGAAGTTTGGACTCACAACACTCGTGCTGCTGCTGTAATGCATGTAACTGATGAAGAGACAGGTTCTGCTATCACTGATCCCCAGAGGCTCTCCATAATCAAGGAGCTTCTATGCAATGTGCTTGGTGGTGGCAACAGGAAGAGGGGGGCTAAGACTGTTGTCACAGATGAAGCCACACACACTGATAGAAGGCTTCACCAAATGATGTTTGCTGATAGGGATTATGAACGAGTTAATGATGATGACTTTGATGAGAAGCAAAGGCCAAATGTGAATGTTGTGAATTGGTCTGACAAGGATTATTCTGTAGTTACTATTCAGTGTAAGGATAGGCCAAAGCTTCTCTTTGACACAGTTTGTACTTTGACAGACATGCAGTATGTGGTTTTTCATGCAAATATCGATGCTGAGGGGCCACAAGCATATCAGGAATATTACATCAAGCACATTGACGGGTCCCCTGTGAAATCAGATGCAGAAAGACAAAGAGTGATACAATGTCTTGCAGCTGCAATTGAGAGAAGAGTTTCTGAGGTGAGTGAGTGA 1026 0.4201 MAFMSEVNMSFSHYMDDEYEKLFRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQILTDLNLIITKAYISSDGGWFMDVFNVTDQDGNKVIDEAILDYIRKSLGPESCVTSPMRSVGVKQTMDHTAIELMGSDRPGLLSEVSAVLTNLKCNIVNAEVWTHNTRAAAVMHVTDEETGSAITDPQRLSIIKELLCNVLGGGNRKRGAKTVVTDEATHTDRRLHQMMFADRDYERVNDDDFDEKQRPNVNVVNWSDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPQAYQEYYIKHIDGSPVKSDAERQRVIQCLAAAIERRVSEVSE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00511 341 SUPERFAMILY ACT-like 126 197 IPR045865 -
Cca06g00511 341 Gene3D - 126 197 - -
Cca06g00511 341 Pfam ACT domain 132 184 IPR002912 -
Cca06g00511 341 Pfam ACT domain 42 102 IPR002912 -
Cca06g00511 341 ProSiteProfiles ACT domain profile. 131 218 IPR002912 -
Cca06g00511 341 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 10 338 IPR040217 -
Cca06g00511 341 CDD ACT_ACR_3 261 335 - -
Cca06g00511 341 CDD ACT_ACR_1 41 111 - -
Cca06g00511 341 CDD ACT_ACR_2 130 203 - -
Cca06g00511 341 SUPERFAMILY ACT-like 38 106 IPR045865 -
Cca06g00511 341 ProSiteProfiles ACT domain profile. 43 122 IPR002912 -
Cca06g00511 341 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 10 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00511 Cca-Chr6 15550285 15554445 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00511 06 15550285 15554445 Cca06g00511 06 15550285 15554445 ECH