Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00446 ATGCTCACCAAGTACCTAACTCTAATTTACACTCATCTCAAATGGGTACTACATTTTCTTCTCTACTATCCCTTTGACATGCTCCATGTTTCTCAGCCACCCATGACTATTGGAGCTGAGTTGAGTACATTCCATTATGAATCCTCGGATGAACATGTAGATTGTGCTGTGTGTCTCCACACAATATGTGAAGCAGATGGGGATATTAGAGTGCTTAGATGTGAACATGTTTTTCACAAAGGTTGTTTGGAAACATGGTTTGGTTTCAAGAATGCCACGTGTCCTCTTTGCAGAGGATCAGCAGCAACAAGGCCTATCACTCACTCGGGGGCTGAGGTTTTGTTATTTCAGTTTTGTTCTGTCCGAAATGAAAACCGTGACACATGGTGGCTACGCTGA 399 0.4286 MLTKYLTLIYTHLKWVLHFLLYYPFDMLHVSQPPMTIGAELSTFHYESSDEHVDCAVCLHTICEADGDIRVLRCEHVFHKGCLETWFGFKNATCPLCRGSAATRPITHSGAEVLLFQFCSVRNENRDTWWLR 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00446 132 SUPERFAMILY RING/U-box 49 102 - -
Cca06g00446 132 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 125 - -
Cca06g00446 132 SMART ring_2 55 97 IPR001841 -
Cca06g00446 132 ProSiteProfiles Zinc finger RING-type profile. 55 98 IPR001841 -
Cca06g00446 132 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 2 125 - -
Cca06g00446 132 Pfam Ring finger domain 54 98 IPR001841 -
Cca06g00446 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 103 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00446 Cca-Chr6 13808888 13809522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00446 54 108 C3H Transcription Factor Family AT2G04240 45.455 4.83e-11 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00446 06 13808888 13809522 Cca06g00446 06 13808888 13809522 ECH