Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00444 ATGTTCATGAAGTACTTAACTTCATTTTACACTCATCTGAAATGGGTGTTAAATTTTCTTATCTATTGTCCCTTCTACAAGCTCCATGATTCTCAAATTCCATTGATTGGGGAAGACCAAAGCATATGCCACTATGCACCCACCCAAGGCTCAGATGAAGATGTTGATTGTGCCGTTTGTCTAAGCAAAATTGTGCATGGTGAAGAGATTAGAGTGCTTAGGTGTGAACATTTGTTTCACAGAAAGTGCTTGGATACATGGGTTGGTCTCAAATTTGCAACTTGCCCTCTTTGCAGAGAACCAATTGGACCAAGAAGGACCATCACCCAGGTTGGAGCTCAAGTTCTACTGTTTCAGTTTTGTTCTAACCACAATGATGACCGTGATACATGGTGGCTACGCTGA 405 0.4148 MFMKYLTSFYTHLKWVLNFLIYCPFYKLHDSQIPLIGEDQSICHYAPTQGSDEDVDCAVCLSKIVHGEEIRVLRCEHLFHRKCLDTWVGLKFATCPLCREPIGPRRTITQVGAQVLLFQFCSNHNDDRDTWWLR 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00444 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 106 IPR013083 -
Cca06g00444 134 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
Cca06g00444 134 Pfam Ring finger domain 56 99 IPR001841 -
Cca06g00444 134 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 3 127 - -
Cca06g00444 134 SMART ring_2 57 98 IPR001841 -
Cca06g00444 134 SUPERFAMILY RING/U-box 51 112 - -
Cca06g00444 134 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00444 Cca-Chr6 13726028 13726695 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00444 56 102 C3H Transcription Factor Family AT1G15100 55.319 2.77e-13 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00444 06 13726028 13726695 Cca06g00444 06 13726028 13726695 ECH