Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00439 ATGTCCGCGGTGTCGCCGTCTCCGGCGTCATCCACGGCTGCGCCACCGCCACAAACACCACCTTCTTCCAACACTACTAGTCCCTCGCCGTCCACCCCCACCGCCACTCCACCGCCGCAACAACCCCCTTCTCCCCTTTCACCGCCTCCATCAACCCCACCTCCGGCGTCGCCGCCGCCTGCTCCGCTGTTACCGCCTCCCCCCATGTCTGGAACTTCCCCTCCATTAGCACCTCCACCATCACCACCGCCGTCTTCACCACCGCCAACTTCTCCGGCGCCGCCACCAGTTCCACCTAGCTCTCCACCACCGCCACCACCGTCAGCACCGGTTCCATCAAGAAGCCCTCCACCGCCCCCACCATCTAACAATACATCTCCACCACCATCATCACCACCGCCACAGCCATCAGCACCACCACCAAACAACTCATCATCACCACCACCGCGAAATTCGCCACCTCCTCCGGCCGCCACGCCGCCACGGTCCCCGCCACCTAAAAATTCACCACCCCCTACGACAGCACCACCCCCCAGAAACTCCACTCGGTCGCCGCCGCCACCGGTTAACTCACCGCCACCGCCGGCAGCTGTGCCGCCGACAAGGTCATCGCCGCCACCGGCACCAGCACCATCCACCCCTCCTCCTAGGATTAGTCCTCCTCCTACACCAAGTTCTCAACCAATTCCACCTTCAAATTCTACACCAAGATCATCACCTCCACCACCACCTTCTATTATTCAATTGTCTccaccgccgtcgcgagtttcatcaccaccgccaccgccgccgcAGAATGGGACAGAAAACTCAAGCCCCGGTGAAGGTGGAGGAGGAATTGGCATTGGTGGTGTAATTGGTATTAGTGTGGCTGGAATTCTGCTGCTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGGAGGCAAAAGAAAAAGGTGCCTTTGAATGGTGGTTATGTCATGCCATCCACTCTCGCTTCATCCCCTGAATCagATTCATCCTTCTTTAAGACACACTCCTCGGCTCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTTTGTACACACCATCTGACCCTAGTGGACTAGGCCATTCAAGGTCATGGTTTTCATACGAAGAACTAATCAAGGCCACAAATGGTTTCTCAACTCAAAATCTTTTGGGTGAGGGTGGGTTTGGTTGTGTGTATAAAGGATACCTTCCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAGATTGGAGGAGGTCAGGGGGAGAGAGAATTCAAGGCTGAAGTCGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACACCAGGAGACTACTTGTCTATGACTATGTCCCTAACAATACCCTTTATTTTCATCTGCAAGGGGAAGGTCAGCCTGTGCTAGAATGGACAAACCGTGTTAAAATTGCAGCCGGTGCAGCCCGGGGAATAGCTTATCTCCATGAAGACTGCAACCCTCGGatcatccatagggatatcaagtcatcaaacattcttttggactacaactatgaagctcggGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCAAATACGCACATAACCACACGTGTCATGGGAACTTTTGGgtatatggcccctgaatatgcatcaagtggaaaattgactgagaagtctgatgtatattcttttggagttgtacttttggagctcattactggaaggaagccagttgatgcatcccaacctttgggagatgaaagcttagttgaatggGCTCGACCTTTGCTGAGTCACGCACTTGATACTGAGGATTTCGATAATTTGGCGGATCTAAGGCTAGAAAAGAATTACGTTGAGAGTGAATTGTATTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCATTCGATAGCTTAGCAGGTTCAGATCTAACTAATGGAATGCGACTTGGGGAAAGCGAGGTGTTTGACTCTGCACAGCAATCTGCAGAAATAAGATTATTTCGGAGAATGGCATTTGGTAGTCAAAATTATAGCACAGACTTCTTTAGCCATGCTAGTTTGAATCCATGA 2130 0.4573 MSAVSPSPASSTAAPPPQTPPSSNTTSPSPSTPTATPPPQQPPSPLSPPPSTPPPASPPPAPLLPPPPMSGTSPPLAPPPSPPPSSPPPTSPAPPPVPPSSPPPPPPSAPVPSRSPPPPPPSNNTSPPPSSPPPQPSAPPPNNSSSPPPRNSPPPPAATPPRSPPPKNSPPPTTAPPPRNSTRSPPPPVNSPPPPAAVPPTRSSPPPAPAPSTPPPRISPPPTPSSQPIPPSNSTPRSSPPPPPSIIQLSPPPSRVSSPPPPPPQNGTENSSPGEGGGGIGIGGVIGISVAGILLLGFIGVLIWCMRRQKKKVPLNGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVLYTPSDPSGLGHSRSWFSYEELIKATNGFSTQNLLGEGGFGCVYKGYLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDTRRLLVYDYVPNNTLYFHLQGEGQPVLEWTNRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNYEARVSDFGLAKLALDANTHITTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHALDTEDFDNLADLRLEKNYVESELYCMIEVAAACVRHSAAKRPRMGQVVRAFDSLAGSDLTNGMRLGESEVFDSAQQSAEIRLFRRMAFGSQNYSTDFFSHASLNP 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00439 709 ProSiteProfiles Protein kinase domain profile. 382 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00439 709 SUPERFAMILY Protein kinase-like (PK-like) 361 653 IPR011009 -
Cca06g00439 709 Gene3D Transferase(Phosphotransferase) domain 1 458 669 - -
Cca06g00439 709 Gene3D Phosphorylase Kinase; domain 1 359 457 - -
Cca06g00439 709 MobiDBLite consensus disorder prediction 10 268 - -
Cca06g00439 709 Pfam Protein kinase domain 383 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00439 709 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 83 704 - -
Cca06g00439 709 MobiDBLite consensus disorder prediction 1 277 - -
Cca06g00439 709 SMART serkin_6 382 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00439 709 CDD STKc_IRAK 388 658 - -
Cca06g00439 709 PANTHER BNACNNG34790D PROTEIN 83 704 - -
Cca06g00439 709 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Cca06g00439 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00439 Cca-Chr6 13596423 13603364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00439 94 701 Trihelix Transcription Factor Family AT1G70460 47.508 5.80e-167 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca06g00439 Pkinase 1.9e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00439 06 13596423 13603364 Cca06g00439 06 13596423 13603364 ECH