Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00425 ATGATGCCCCCTCAGCAAGAAACCGCCGTCACATCAAACATTCCGGCCATCCCCAACCGCCCGGAAAACAGCTCCGTCCATGCCGAACCACCGAGCTCCGCCACCCATCATGACACCAAACCCACTTTCATCACCAATGACAACACTCACAACATTAATAATTCTCATCCTTCTCCTTCACCACCCAGATTTTCTATTCTTCGCCAATCCATGCGCCCCATTACCCTCAAATTTGAGGATGTTTCCTACACCATAAACTTTGGAAGGGACAAGAATGGTTGTGTAGCTTCTCAAAAGCCAAAGGTTACAAGGACAGTGTTGAATGGTGTGACGGGTATGGTGGGACCCGGCGAGGTGATGGCAATGTTGGGCCCCTCAGGGAGTGGCAAGACCACCTTGCTCACCGCCCTCGCCGGCCGTCTCGCCGGAAAACTCTCCGGCGCCGTCACGTACAACGGCCACCCTTTCTCCAGCTCCATCAAACGCAACATAGGGTTTGTGTCACAAGATGACATATTGTATCCTCACCTCACCGTGCTCGAGACTCTAACCTATGCTGCCATGTTGAGACTTCCCAAAAGTTTGACAAAGGAAGAGAAAAGGGAACAAGTTGAAATGATCATTGTGGAACTAGGGCTATCCCGGTGCCGGAACAGCCCGGTTGGCGGCAGCACCGCCTTGTTCCGGGGGATATCCGGCGGGGAGCGAAAGCGGGTCAGCATCGGGCAAGAGATGCTGGTGAACCCTAGTTTGTTGTTGCTCGATGAGCCGACGTCAGGGTTGGACTCCACCACGGCCCAGCGCATCGTGGCGATGCTCCAGAGCCTCGCCCGATGCGGCCGGACCGTGGTGACGACCATACACCAGCCCTCGAGCCGGTTGTATAGGATGTTTGATAAGGTGGTGGTGTTGTCGGACGGGTACCAAATTTTTACCGGGCCAACGGGTCGGGTCATGGATTATCTCGAGTCCATTGGGTTTGCACCCGCTTTCAACTTCATGAACCCGGCTGATTTTCTGCTTGACCTCGCTAATGGCATAGTTGCTGATGTCAAACAGGATGATCACATAGATCATCATGAGGATCAAGCTTCAATCAAACAGTTCCTAGTTTCATCATATAAGAAGAACTTATACCCTCTTCTCAAGCAAGAGATTCAACAGAATCAAAGAGGACTGGTATTTTCTACTTCAGGAACACCTAGAAGTTCTGAGAACCAATGGACCACTAGCTGGTGGGAGCAATTCATGGTTCTGCTTAAGAGGGGTTTAAAGGAAAGGAGACATGAATCATATTCTGGCTTAAGAATTTTCCAAGTCTTGACTGTCTCTATTCTCTCAGGACTTCTGTGGTGGCATTCTGATCCCTCGCATATACAAGACCAGGTAGGTCTGTTATTCTTCTTCTCAATCTTCTGGGGGTTCTTCCCTCTCTTCAATGCCATCTTTGCTTTTCCTTTGGACCGGCCAATGCTGAAGAAAGAAAAATCATCAGGCATGTACCATCTATCTTCCTACTATGTAGCCAGAATGGTAGGTGACTTACCAATGGAGCTTGTGCTTCCTACCATCTTTGTAACCATCTCTTATTGGATGGGGGGTCTCAAGCCATCTCTGGTCACATTTGTGTTAACCCTCTTGATCATGCTTTTCAATGTGCTGGTTTCTCAAGGAATAGGCCTAGCACTTGGGGCCATTCTAATGGATGTCAAACAGGCCACAACCTTAGCTTCAGTAACTATGTTGGTGTTTCTTCTGGCTGGAGGGTACTACATTCAGCAAATGCCATCCTTTATAGCTTGGTTGAAGTACATTTCTTTCAGCCACTATTGCTACAAGCTTCTTGTTGGAGTGCAGTACTCAGTGAATGAGGTCTATGAGTGTGGACCAGGGTTGCATTGTAGGATGAGAGATTTTCCTGCCATAAAGTGTCTAGGGCTTGATGGTTTGTGGGGAGATGTGGCTGTATTGACTGTGATGTTGATTGGATACAGGGTTGTGGCTTATTTGGCTTTAAGGATGGGGCTGCATCATTAA 2037 0.4885 MMPPQQETAVTSNIPAIPNRPENSSVHAEPPSSATHHDTKPTFITNDNTHNINNSHPSPSPPRFSILRQSMRPITLKFEDVSYTINFGRDKNGCVASQKPKVTRTVLNGVTGMVGPGEVMAMLGPSGSGKTTLLTALAGRLAGKLSGAVTYNGHPFSSSIKRNIGFVSQDDILYPHLTVLETLTYAAMLRLPKSLTKEEKREQVEMIIVELGLSRCRNSPVGGSTALFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAMLQSLARCGRTVVTTIHQPSSRLYRMFDKVVVLSDGYQIFTGPTGRVMDYLESIGFAPAFNFMNPADFLLDLANGIVADVKQDDHIDHHEDQASIKQFLVSSYKKNLYPLLKQEIQQNQRGLVFSTSGTPRSSENQWTTSWWEQFMVLLKRGLKERRHESYSGLRIFQVLTVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLDRPMLKKEKSSGMYHLSSYYVARMVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPSFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGPGLHCRMRDFPAIKCLGLDGLWGDVAVLTVMLIGYRVVAYLALRMGLHH 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00425 678 MobiDBLite consensus disorder prediction 1 62 - -
Cca06g00425 678 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 52 675 - -
Cca06g00425 678 Pfam ABC transporter 107 259 IPR003439 GO:0005524
Cca06g00425 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 324 IPR027417 -
Cca06g00425 678 Gene3D - 78 325 IPR027417 -
Cca06g00425 678 SMART AAA_5 116 308 IPR003593 -
Cca06g00425 678 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524
Cca06g00425 678 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 331 IPR003439 GO:0005524
Cca06g00425 678 Pfam ABC-2 type transporter 414 620 IPR013525 GO:0016020|GO:0140359
Cca06g00425 678 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 52 675 - -
Cca06g00425 678 Pfam ABC-2 type transporter 288 353 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00425 Cca-Chr6 13265762 13270533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00425 99 307 Calmodulin-binding Proteins AT2G36910 31.944 2.49e-13 72.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00425 06 13265762 13270533 Cca06g00425 06 13265762 13270533 ECH