Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00424 ATGACGGACATCACTGACGACATAGCGGAGGAAATCTCATTCCATCTCTTCGATGATGACTGTAGATTGTTGGGAAACCTTCTCAAAGACATTTTGCAGAGAGAGGTTGGCACCACCTTCGTTGACAAGCTTGAAAAAATTCGAGTCCTTTCACAGAGTGCTTGTAATATGAGACAGGCAGGGATTGAGGACATGGCTGAGCTACTGGAAAAACAATTGGCTTCAGAGTTGTCCAAGATGACACTAGAAGAAGCTCTAACACTTGCTCGTGCCTTTAGCCATCATCTTACTTTGATGGGTATAGCTGAAACCCACCATAGGGTTCGTAAAGGAGGAAATTTGGCTTATGTTGCAAAATCTTGCGATGATATCTTTAACCAGTTGTTGCAAGCTGGTGTTTCTCCTGATGATCTTTATAGCACAGTTTGCAAGCAGGAGGTGGAAATCGTTCTCACAGCTCATCCGACTCAAATTAATCGCCGTACCTTGCAATACAAACACATTAAAATTGCTCATCTTTTAGATTATAATGATCGACCTGATCTTGGCCCTGAAGATCGAGATATGGTTATCGAAGATCTGGTAAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGCGAGAAACCCACACCAGTTGATGAAGCCAGGGCTGGATTGAATATTGTGGAGCAATCACTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTTAGCAGCGCTTTAAAGAAGCACACGGGAAAACCACTTCCATTGACTTGCACTCCCATTAAGTTTGGATCTTGGATGGGAGGTGATAGAGACGGAAACCCAAATGTGACAGCAAAGGTCACAAAAGATGTTTCACTTCTATCAAGATGGATGGCAATTGACCTCTATGTTCGGGAAGTGGATAGCATGAGATTTGAGTTATCCATGAACCGGTGTAGCGATAAGCTGTTAAGACTAGCACATGAAATTCTAGAAGAAACTAACAATGAGGAGGATCGCCGTGAACATTGGAATGAATCTGTGAGTAGAAGTCAATTCAAAAGTCCTAATCAACAAGCTTTACCATTTCCAACTAAACTTCCATCTGGAGCTCATTTACCCTCTTGTGCTGAAAAGGGTGGATCTGAGCATCCCAGACTCATGCCAGGAGCTGATCAAAAGAAACCCAATCACAAGGATGGTGGGATTTCAAGTTCAACTGAGAGCAATAGTGGCAATCGCAATGTTCGTTCATCAATACCAATTTCACCAAGTTCCAGTGCTACTTCATTAGCTTCAATGACACGCTCTCCTTCTTTCAACTCTAGTCAACTTCATGCTCAGAGGAAATTGTTTGCAGAATCCCAGATAGGAAGAACCAGTTTTCAGAAGCTTTTGGAGCCAAAGCTCCCTCAGTTTCCTGGAATTGCTCCTTATAGAGTTGTTCTTGGACATGTAAAAGATAAGCTTGTTAAAACTCGTAGATGGTTGGAGCTTCTTATTGAGGATGGTCCATGTGAGCATAATCCTATGGATTATTATGAAACAACAGAGCAACTTTTGGAACCTCTGCTTCTTTGTTATGAATCTCTGCAATCATGTGGATCTGGGGTGCTAGCTGATGGTCGACTTGCTGATATAATTCGAAGAGTTGCTACCTTTGGCATGGTGTTAATGAAGCTTGATTTGCGTCAAGAATCTGGCAGACATGCTGAAACACTAGATGCAATTACAAGGTATTTGGATATTGGTAAATACAGTGAATGGGATGAAGAAAAGAAACTGGACTTCTTAACTAAAGAGTTGAAAGGGAAGAGGCCACTGGTTCCAGTTAGTATAGAGGTTTCTCCAGATGTTAGAGAAGTGTTGGATACGTTCCGAACTGCGGCTGAGCTAGGGAGTGATTCATTTGGTGCCTATGTGATCTCTATGGCCTCAAATGCAAGTGATGTTCTTGCAGTAGAGCTTTTGCAGAAGGATGCACGACTTGCTGTTAGTGGGGAGTTAGGAAGAGCATGTCCTGGTGGAACGTTGCGGGTGGTTCCTCTATTTGAAACTGTGAAGGACCTGAGAGGAGCTGGTTCAGTTATCAGAAAGCTTTTGTCAATAGATTGGTACCGCCAACACGTCATTAAAAACCATAATGGGCATCAAGAGGTTATGGTTGGGTATTCTGATTCTGGTAAAGATGCTGGGCGCTTTACTGCTGCTTGGGAACTCTACAAAGCTCAGGAGGATGTTGTGGCTGCATGCAAGGAATATGGTATTAAGGTTACTCTCTTCCATGGCCGTGGAGGGAGTATTGGCCGTGGTGGTGGCCCAACATATCTGGCTATTCAGTCTCAACCACCCGGCTCTGTGATGGGAACCCTTCGTTCAACTGAGCAAGGAGAGATGGTGCAGGCCAAGTTTGGCCTGCCACAGACAGCTGTTAGACAGCTTGAGATATACACAACAGCTGTGCTACTTGCTACCCTTCGTCCACCTCTCCCGCCAAGAGAAGAAAAATGGCGCAATCTCATGGAAGATATCTCAAAGATCAGTTGCCAGTGTTACCGCAATGTAGTATATGAAAATCCAGAATTCCTGTCCTACTTCCATGAAGCCACACCTCAAGCAGAGCTAGGCTTCCTCAACATAGGCAGCCGCCCCACAAGGCGAAAGAGCACGACCGGAATTGGCCACCTTCGTGCCATTCCGTGGGTGTTTGCATGGACTCAAACCAGGTTTGTCCTTCCAGCCTGGCTTGGAGTTGGAGCAGGCTTGCAAGGTGTTATTGAGAAAGGACAAAGTGATGAGCTAAAGGCCATGTACAAAGAGTGGCCTTTCTTTCAAAGCACAATAGACTTGATTGAGATGGTTTTGGGAAAAGCAGATATTCCTATTGCTAAGCACTATGATGAAGTTCTTGTCTCACAGCAGAGGCAAGAACTTGGAACTCAACTGAGGAATGAGCTCATCACAACTGGCAAGTTTGTGCTAGTGGTTAGTGGCCATGAGAAGCCTCAGGAGAATAACAAGAGCCTAAGGAGGCTTATTGAGAGTAGACTTCCCTTTCTCAATCCCATGAATATGTTGCAAGTAGAGATACTCAAGAGGCTAAGATGTGATGATGACAACCTTAAAGCCAGAGATGCCTTGCTTATCACCATAAATGGTATTGCTGCAGGGATGAGGAACACTGGTTAA 3165 0.4427 MTDITDDIAEEISFHLFDDDCRLLGNLLKDILQREVGTTFVDKLEKIRVLSQSACNMRQAGIEDMAELLEKQLASELSKMTLEEALTLARAFSHHLTLMGIAETHHRVRKGGNLAYVAKSCDDIFNQLLQAGVSPDDLYSTVCKQEVEIVLTAHPTQINRRTLQYKHIKIAHLLDYNDRPDLGPEDRDMVIEDLVREITSIWQTDELRREKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSSALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYVREVDSMRFELSMNRCSDKLLRLAHEILEETNNEEDRREHWNESVSRSQFKSPNQQALPFPTKLPSGAHLPSCAEKGGSEHPRLMPGADQKKPNHKDGGISSSTESNSGNRNVRSSIPISPSSSATSLASMTRSPSFNSSQLHAQRKLFAESQIGRTSFQKLLEPKLPQFPGIAPYRVVLGHVKDKLVKTRRWLELLIEDGPCEHNPMDYYETTEQLLEPLLLCYESLQSCGSGVLADGRLADIIRRVATFGMVLMKLDLRQESGRHAETLDAITRYLDIGKYSEWDEEKKLDFLTKELKGKRPLVPVSIEVSPDVREVLDTFRTAAELGSDSFGAYVISMASNASDVLAVELLQKDARLAVSGELGRACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRQHVIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACKEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATLRPPLPPREEKWRNLMEDISKISCQCYRNVVYENPEFLSYFHEATPQAELGFLNIGSRPTRRKSTTGIGHLRAIPWVFAWTQTRFVLPAWLGVGAGLQGVIEKGQSDELKAMYKEWPFFQSTIDLIEMVLGKADIPIAKHYDEVLVSQQRQELGTQLRNELITTGKFVLVVSGHEKPQENNKSLRRLIESRLPFLNPMNMLQVEILKRLRCDDDNLKARDALLITINGIAAGMRNTG 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00424 1054 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Cca06g00424 1054 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 8 1054 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca06g00424 1054 MobiDBLite consensus disorder prediction 394 432 - -
Cca06g00424 1054 MobiDBLite consensus disorder prediction 341 356 - -
Cca06g00424 1054 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 19 1054 IPR015813 GO:0003824
Cca06g00424 1054 MobiDBLite consensus disorder prediction 327 432 - -
Cca06g00424 1054 Gene3D Phosphoenolpyruvate/pyruvate domain 420 548 - -
Cca06g00424 1054 Gene3D Phosphoenolpyruvate/pyruvate domain 289 354 - -
Cca06g00424 1054 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca06g00424 1054 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca06g00424 1054 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca06g00424 1054 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 8 1054 - -
Cca06g00424 1054 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1054 IPR022805 GO:0006099|GO:0008964|GO:0015977
Cca06g00424 1054 Pfam Phosphoenolpyruvate carboxylase 431 1054 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca06g00424 1054 Pfam Phosphoenolpyruvate carboxylase 19 338 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca06g00424 1054 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 712 724 IPR033129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00424 Cca-Chr6 13211977 13224150 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00424 06 13211977 13224150 Cca06g00424 06 13211977 13224150 ECH