Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00420 ATGAGGAACTTCAAGGCTTTTAGTCATGCCATAATTGGTCTCTTCATTATCTCTATGAGTGCAAGGTGTTGTGGACAAGTGGAACTTGACACAGCTCCAATGAAGAAGGCTGAGAGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTCAGGGGGTCTCTTGTGATCTGTTTAATGGATTTTGGTATGTTACTGTCTTGAACATTGGACCAATCCACGACAATTCTCTAAGTTGTGGCAAAATTTTGGCATTCAGGCCACAGTTGTTTGAACTGAAGCACCTTAAAGCTATATCCTTTTTCAAATGCTTTGAACCACAACACAAGCATCCAGTTACCATCCCCAATGCAAACTGGGAAAAACTGGCTGACAGTTTAGAATCACTTGAATTTAGATCAAACAAAGGTCTCATTGGAAAAATTCCCTCAAGTTTTGGTGTCCTCAGGAACCTTCAGTCACTAGTACTATTAGACAATGGCTTAACGGGCGAAATTCCACCAGATATTGGCAACCTCAACAAGTTGAAGAGGCTTGTTCTTGCTGGTAACTATTTAACTGGACACATTCCAGATATTTTTACTTCACTAGGTGAGTTACTAATACTTGATTTAAGTAGAAATTCACTATCTGGTACTTTACCTTTGACTCTTGGGAGGCTAACTTCCCTTTTGAAGCTTGATGCGAGTCATAACAACTTGGAGGGGAATCTCCTTAAAGAATTTGCTTATCTTAAGAATCTGACCCTTATGGACCTTAGGAGTAACAGATTCTCTGGAGGGTTGACCTTAAGTATTCAAGAGATGTATTCTTTAGAGGAAATGGTTCTGTCCAACAACGCAATAGGTGGAGATATCAGGTCTCTAAAGTGGCAAAACCTTCATAACCTGGTAATTTTGGATCTCTCTAACATGTGGTTGGCAGGGGAAATTCCTGAGTCTATATCAGAATTGAAGAGGTTGAGATTTTTAGGCCTTAGTGACAACAACATAACAGGCAAACTTTCACCAAAACTATCAACTCTTCCTTGTCTGAGTGCACTATATGTTAGTGGCAACAATCTAGCAGGAGAGCTTAAATTCTCTATGGAGTTTTATGGAAAAATGGGAACACGTTTTGGGGCCTGGAACAACCCCAGCCTTTGCTACCCTGTTGAAGTAATGTCCACAAGTCATGTTCCATTTGGGGTAAAACCATGCCAGCAAGAGATCAAATTGCAAAAATCTAATACAACTTTTGAAGGGGATGTGAACAAGACTTATCATTCCATTTCCACCACACCCTCTTCAGGATTTATGAGTCATGCCCCTAATGGTTTCTGCTGCACTTTTCTCTTCATCATGGTTCTCTTGAATTCTTATGTAGGTCTTTAA 1428 0.4048 MRNFKAFSHAIIGLFIISMSARCCGQVELDTAPMKKAERDALYSTIQGFVGDWWNGSDLYPDPCGWTPIQGVSCDLFNGFWYVTVLNIGPIHDNSLSCGKILAFRPQLFELKHLKAISFFKCFEPQHKHPVTIPNANWEKLADSLESLEFRSNKGLIGKIPSSFGVLRNLQSLVLLDNGLTGEIPPDIGNLNKLKRLVLAGNYLTGHIPDIFTSLGELLILDLSRNSLSGTLPLTLGRLTSLLKLDASHNNLEGNLLKEFAYLKNLTLMDLRSNRFSGGLTLSIQEMYSLEEMVLSNNAIGGDIRSLKWQNLHNLVILDLSNMWLAGEIPESISELKRLRFLGLSDNNITGKLSPKLSTLPCLSALYVSGNNLAGELKFSMEFYGKMGTRFGAWNNPSLCYPVEVMSTSHVPFGVKPCQQEIKLQKSNTTFEGDVNKTYHSISTTPSSGFMSHAPNGFCCTFLFIMVLLNSYVGL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00420 475 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Cca06g00420 475 Gene3D Ribonuclease Inhibitor 308 405 IPR032675 -
Cca06g00420 475 Gene3D Ribonuclease Inhibitor 210 307 IPR032675 -
Cca06g00420 475 Gene3D Ribonuclease Inhibitor 36 209 IPR032675 -
Cca06g00420 475 PANTHER PIRIFORMOSPORA INDICA-INSENSITIVE PROTEIN 2-LIKE 7 466 - -
Cca06g00420 475 SUPERFAMILY L domain-like 41 377 - -
Cca06g00420 475 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 7 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00420 Cca-Chr6 13059527 13062249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00420 138 458 Receptor kinase-like Gene Family AT4G08850 29.851 1.10e-32 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00420 06 13059527 13062249 Cca06g00420 06 13059527 13062249 ECH