Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00419 ATGATCATCTCCTACACCAACAACACATTCCCCACGGGAAAGGCGTGGCCCGCCTCCGCGCCGTTCACGCCGCACCGAGGAGGTTCTGCGGTGGCTTCTGCCTCCGCCAAGGGCAAGGCGGTTGACGCCGATCCTCTGCCGCCGCCGCCGTTGGGGTCTCTCACCGAAACCACCGTGGCGGTGGAGTTGGACGCCGGGAACGCTGAGGACTGGAAGCGGTTCTCGGAGTTAGGGTTGCTGGATGAGGCCGTGATGCAGAGGAAGGACAGGGAGGCGCTCTCGGAGAAGGTGTCGAGGCTCGAGAAAGAGCTTTTTGACTACCAGTACAACATGGGCCTCCTGTTGATTGAGAAGAAAGAATGGAATTCAAAGTTTGATCAGCTGAGGCAAGAACTAGCTGAAAGTAAGGAGATTTTAAAACGAGAACAGTCAGCACATTTAATTGCATTATTTGAAGTTGAGAAGCGAGAGGAAAATTTGAGGAAAGCATTGAGCACAGAGAAGCAGTGTGCGGCTGATCTTGAGAGAGCTCTGCGTGCAATGCAAGAAGAGCATGCCCATGTCCAGTCTTCCTCCCATACAAAGCTAGCTGAAGCTAATGCATTGGTTAATGGAATTGAAGAGAAGTCTTCTGTGGTTGACAAGAAACTGCTTGATGCAGAATCTAAGCTTGCTGAGATAAATAGAAAAAATGCAGAGCTGGATATGAAATTACGAGAGGTGGAGGTTCGTGAAAGCTTGCTTCAACAGGAGCGATTGTCTTTAGCTACTGATCGAGAATCATTTGAGGCAACATTCTACAAACAAAGGGAAGATTTGAAAGAGTGGGAAAGGAGGCTACAGCAAAGAGAAGATATGCTATCTGGTGGTAGGCATAATCTTAGTGAGAAAGAAGAAAAGATAGTTGAAACTGAGAAGTACCTGAAGCAGAAAGAGAGAGACCTGGAAGTGTTGGAGAAGAAAATTGATTCATCTAATTCTTTATTGAAAGAAAAGGAAGCTGAGATAATTGGAAGAGTAGCAGATTTAGATGTAGAAGAGAAGAAAGTGGATTCTTTAAAGAGCATGCTGGAGTCAAAAGAGAAAGAATTACTTGCTCTGGAACTAAAGCTTAGTGCTAGAGAAAGAGAGGGGATTCAGAAGCTCCTTGGTGAACAAAAGTCTACTCTGGATTTAAAGTTGCAGCAATTTGAACTTGAACTGGAACAAAAGCAGAAATCTCTTGTTGAGGAGTTTAGGAGCAAGGAGGAAGCCATGGAGCAGAGGGAAGTTGAAGTTAACCATAGAGAAACCAAGGTTAGAAAAGAAGAGCAGGCCTTGAATAAGAAGGCTGAGAGAATAAAGGATCAAAATAAGGAGATTGAAGCAAAGTTGAAATCTTTAaaggaggaagaaaagactatgaaaatcaaagagaaagagttggagaaggaaaaaCAACAACTACTTGCTGATCGGGAGAGCCTGGAGAATTTAAATGCTGAACTTGAGAAGGTAAAAGCTGAGATTTCTCAGCAGGAGATGCAAATATGCCAAGAGAGTGAGAATTTGAAGATTACTGAAGAAGAGAGGTCAGAACATTCTCGTTTGCAATTGGAACTAAAACAGGAGATAGAGCATACCAGATCGCAGAAGGACTTTCTTTTGAAGGAAGCTGAAAACTTAAGGGAGGAGAGACAGAGGTTTGAGAAAGAGTGGGAAGTGCTCGATGAGAAAAGAGTGGAAATTACTAGAAAACAGCATGATTTAGATGTGGAGAAAGAAAGCTTAAGAAAACTTCAGAACAGTGGAGAAGAAAGATTGAAAAGAGAGAAACAACATATCCAAGATCATATAAAGAAAGAGCTGGAGAAGCTTGAATTGGAGAAGGAATCATTTCGAGATTCAATGAATCAAGAGAAACTTCTTTTGTCCGAAATGGCAAAAAATGAAAGGTCACAAATGCTACAAGATTTTGAATCGAAGACGAGGAGTCTTGAGAATGAAATTCAGAAAAGACATGAAGAAATGGATAAAGACTTTCAGGAAAGGGAGAGAGATTTTCAGGAGGAGATGCGAAGAGAGCTTGATAATATTAATATCTTGAAGGATGCAACTGAGAAGGAATGGGGAGAAGTGAAGGCTGAGGAGATTAGGTTAGAAACTGAAAGGAAGGAACTTGAGTCAAACAAACAGCAACTGAAGTCAGGCCAACGTGAGATGCATGAAGATTCTGAAATGCTTATGAATCTCAGTCGGAAGGTTAAGAAGGAACGTGAACGCCTTGTGGCTGAAAGAAAACATTTTCTTGAACTTGTTGAGAAGCTAAGGAGTTGCAAGGGCTGTGGTGAAGTTGTTAGGGACTTTGTTGTATCTGATATTCAGTTACCTGACTTTAAGGAAAGACCTCTTGATAACTCCCAGGACAATGTAGCTGCTTCTGACTTTAACAATTCTGGATCTGTAAGGTCTGTGTCTTGGCTCCGAAAATGCACATCCAAGATTTTCAAATTGTCCCCAAGTAAAAGAACAGATGCTGTTGGTGCTTCAGACATGGCTGGGACATCGCCACTGTCAAATGTGAATGTTAGCGTAGAAAATGTAGATGACCCAGCATCGCTTCCTAATATAGGAGCTAGAGTTATTCCTGAAGAACGGCAACCAGCAGGTGGGATAGCACATCACTCTTCAGATACACCACACCTCCAATCTGATAACATTGTTAAAGAGGTTGGTGATGAATACTCTCTATCCATAGGCGATCATAGCCGTGTGGATAGTTTGGTAGATGGAGATCCAGGTGATTCTCAGCAGTCAGTTCCAAAGGGAGGTCGGCGCAGACCTGGGCGGAAAAGCAAATCTGGAATTGCTAGAACACGCTCAGTGAAGGCTGTTGTTGAAGAGGCCAAGGAGTTCCTAGGTAAAGCCCCAGAGAGAATAGAAAATGCAAGTTTGCAGTCTTTCAATACTGATCCTATCAAAGAAGACAGTCGAGAAGACTCCAGTCACACTGAGAAAGCAATTGGTAACACTAGAAGGAAGCGGCAACGGGCACAGACTTCTAGGGTTACAGAAAGTGAGCAGAATGCGGGTGATAGTGAAGGACACTCAGATAGTATTACAACTGGTGCACGTAGGAAGAAGAGGCAGACGGTTGCTCCACCTGCACAAGTTACTGGGGAGAAACGATACAATCTCAGGCGGCATAAGATTGCGGGCAAAGATTCATCAACACAGGATTTATCTAATAGAACAAAGGGCGTGGAGAAAGAAGCTGCTGGTGGTAAATTGGAGGAGGAAAAAGGCCCTGAAGTTGTTGAAACTTCATCTGTAGTAGCTGAAGACAGTGTACGAAACACATCACTGGTGCAGACTTCTATAGTAAAGACTGTGGAGTTAACAGATGATAGAGTTGTTAGGTTTGAAGTACCAAGAGATATTGTTGATGACAATGGTGCTGCAACTGACTCTCTGAATCGTGTGGAGGAAAATGGTACACCAGAATATCGAGATGGAGATGGAAGTACAATCCatgatgttgaaaatgatgatgatgaagaggagtatgaggaggaagaagaagaggaACATCCGGGTGAGGTGTCTATTGGAAAGAAGATCTTCAGATTTTTTACAACATGA 3621 0.4217 MIISYTNNTFPTGKAWPASAPFTPHRGGSAVASASAKGKAVDADPLPPPPLGSLTETTVAVELDAGNAEDWKRFSELGLLDEAVMQRKDREALSEKVSRLEKELFDYQYNMGLLLIEKKEWNSKFDQLRQELAESKEILKREQSAHLIALFEVEKREENLRKALSTEKQCAADLERALRAMQEEHAHVQSSSHTKLAEANALVNGIEEKSSVVDKKLLDAESKLAEINRKNAELDMKLREVEVRESLLQQERLSLATDRESFEATFYKQREDLKEWERRLQQREDMLSGGRHNLSEKEEKIVETEKYLKQKERDLEVLEKKIDSSNSLLKEKEAEIIGRVADLDVEEKKVDSLKSMLESKEKELLALELKLSAREREGIQKLLGEQKSTLDLKLQQFELELEQKQKSLVEEFRSKEEAMEQREVEVNHRETKVRKEEQALNKKAERIKDQNKEIEAKLKSLKEEEKTMKIKEKELEKEKQQLLADRESLENLNAELEKVKAEISQQEMQICQESENLKITEEERSEHSRLQLELKQEIEHTRSQKDFLLKEAENLREERQRFEKEWEVLDEKRVEITRKQHDLDVEKESLRKLQNSGEERLKREKQHIQDHIKKELEKLELEKESFRDSMNQEKLLLSEMAKNERSQMLQDFESKTRSLENEIQKRHEEMDKDFQERERDFQEEMRRELDNINILKDATEKEWGEVKAEEIRLETERKELESNKQQLKSGQREMHEDSEMLMNLSRKVKKERERLVAERKHFLELVEKLRSCKGCGEVVRDFVVSDIQLPDFKERPLDNSQDNVAASDFNNSGSVRSVSWLRKCTSKIFKLSPSKRTDAVGASDMAGTSPLSNVNVSVENVDDPASLPNIGARVIPEERQPAGGIAHHSSDTPHLQSDNIVKEVGDEYSLSIGDHSRVDSLVDGDPGDSQQSVPKGGRRRPGRKSKSGIARTRSVKAVVEEAKEFLGKAPERIENASLQSFNTDPIKEDSREDSSHTEKAIGNTRRKRQRAQTSRVTESEQNAGDSEGHSDSITTGARRKKRQTVAPPAQVTGEKRYNLRRHKIAGKDSSTQDLSNRTKGVEKEAAGGKLEEEKGPEVVETSSVVAEDSVRNTSLVQTSIVKTVELTDDRVVRFEVPRDIVDDNGAATDSLNRVEENGTPEYRDGDGSTIHDVENDDDEEEYEEEEEEEHPGEVSIGKKIFRFFTT 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00419 1206 Coils Coil 538 572 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 1077 1098 - -
Cca06g00419 1206 Coils Coil 649 669 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 1171 1190 - -
Cca06g00419 1206 Coils Coil 433 509 - -
Cca06g00419 1206 PANTHER PROTEIN CROWDED NUCLEI 3 22 1206 - -
Cca06g00419 1206 Coils Coil 118 145 - -
Cca06g00419 1206 PANTHER PROTEIN CROWDED NUCLEI 4 22 1206 IPR040418 GO:0005634|GO:0006997
Cca06g00419 1206 MobiDBLite consensus disorder prediction 916 955 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 413 437 - -
Cca06g00419 1206 Coils Coil 343 377 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 1142 1196 - -
Cca06g00419 1206 Coils Coil 294 335 - -
Cca06g00419 1206 Coils Coil 682 702 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 1156 1170 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 640 659 - -
Cca06g00419 1206 Coils Coil 387 407 - -
Cca06g00419 1206 Coils Coil 598 636 - -
Cca06g00419 1206 Coils Coil 83 110 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 985 1005 - -
Cca06g00419 1206 Coils Coil 217 251 - -
Cca06g00419 1206 Coils Coil 706 733 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 974 1105 - -
Cca06g00419 1206 MobiDBLite consensus disorder prediction 1015 1031 - -
Cca06g00419 1206 Coils Coil 164 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00419 Cca-Chr6 13016909 13032026 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00419 06 13016909 13032026 Cca06g00419 06 13016909 13032026 ECH