Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00418 ATGGCGTCCGAGAGTGCTTCTCGATCGAGTTCCGCGGCTGATTCCTACGTTGGCAGCTTGATAAGCTTGACCTCCAAGAGTGAGATCAGATACGAAGGCATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAACGTGCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGTCCACAAATTCCTCCAGGCGACAAGGTTTATGAGTATATACTTTTCCGCGGGTCTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCCCAAGTCAACAATGACCCAGCTATTATTCAGTCTCACTATCCTCGCCCAGTCACCACATCTACAACTTTGCCTTCTGCTGTAAGTGGGCCTTTGACTGATCTTGGTTCTCAAACCACCCAGCTTGGACTTCCTGGGTCAAATTTGCAAGGGCCCTTGCCTTTGTATCAACCTGGAGGGAACATAGGATCATGGGGAGCTTCTCCACCTGCTCCAAATGCAAATGGTGGTAGGCTTGCGATGCCAATGTATTGGCAAGGATACTATGCCCCAAATGGGCTTCCTCAGTTACACCAACAATCTTTTCTTCGACCGCCACCTGGTTTATCAATGCCTCCATCCATGCAGCAGCCATTGCAGTATCCCAATTTCAGTCCCTCTTTACCTAATGTATCTTCTAATTTGCCAGAATTACCATCATCTTTGCTACCTGTGAGTTCTAGTACCTCCAGTGTAACATCTGCCTCCTTTCCTTCATCTAATTTGCCTCCTGCACCTTCTGCTTTGCCTCCTGCACCTTCTACTTTATCTCCTGTACCTTCTGCTGCGCTAGCTTCTGAAATTTTGCCAGTATCAGTAACAAACAAGGCACCCAATGTTTCAACTTCAGCAGCCGTGTTAGCTGCTAACTTACCATCACTGACTTCACTGACCGATTCTAGTTCAGATATTAATGCTATAGTGCCACCAATCTCAAGCAAATTGAATGCGATTTCAGGTTCTAGCTTGCCCTATCAAACTGTATCCCAGTTGTCTTCTGCAGTTGTTGGATCATCAAGTACTATCCATACCGAAACATCTGCCCCATCTCTGGTAACCCCAGGTCAATTATTGCAGCCTGGTCCAACTATAGTTTCTTCAGCTCAGCCTTCACAAGCACCTCATAAGGATGTTGAAGTGGTTCAGGTGTCATCAACATCATCTCCTGAGCCATCTTTGCCAGTTTCTGCGGAAACTCAACCACCAATACTGCCATTGCCAGTAACTTCACGGCCCAGCCACAGGGTCAGTGGAGCTCTTAACCAGACTCATCCTGGCTATAGTTACAGAGGACGTGGAAGAGGAAGAGGAACTGGGGGTTTGCGCCCAGTCACAAAATTCACTGAAGATTTTGATTTCATGGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCATCTTGGTAAAAATAAGTCTAATTCAAAAGACAAAGATGGGGAAGAAAATTCCTTTGATGAAGATTATCAAGATGAAGACAATGACGATGAATCAAACTTTGAGGTCAAGCCTATTTATAACAAGGACGACTTCTTTGACTCGCTCTCATCCAACGTGCATGGTAATGCTTCTCAAAATGGAAGGACTAGATACTCTGAACAAATCAAGATTGATACTGAGACATTTGGCGATTTTGTGAGGCATCGTGGTGGTCGAGGCGGCCGTGGTGGACGTTCTCGAGGTGGTTATTATGGAAGAGGTGGAGGATATGGCTACTCTGGACGAGGAAGGGGACGTGGTGGCGGTGGCGGTGGCATTCCCGGTCGCAATTTGTAG 1827 0.462 MASESASRSSSAADSYVGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPGDKVYEYILFRGSDIKDLQVKSSPPVQPTPQVNNDPAIIQSHYPRPVTTSTTLPSAVSGPLTDLGSQTTQLGLPGSNLQGPLPLYQPGGNIGSWGASPPAPNANGGRLAMPMYWQGYYAPNGLPQLHQQSFLRPPPGLSMPPSMQQPLQYPNFSPSLPNVSSNLPELPSSLLPVSSSTSSVTSASFPSSNLPPAPSALPPAPSTLSPVPSAALASEILPVSVTNKAPNVSTSAAVLAANLPSLTSLTDSSSDINAIVPPISSKLNAISGSSLPYQTVSQLSSAVVGSSSTIHTETSAPSLVTPGQLLQPGPTIVSSAQPSQAPHKDVEVVQVSSTSSPEPSLPVSAETQPPILPLPVTSRPSHRVSGALNQTHPGYSYRGRGRGRGTGGLRPVTKFTEDFDFMAMNEKFKKDEVWGHLGKNKSNSKDKDGEENSFDEDYQDEDNDDESNFEVKPIYNKDDFFDSLSSNVHGNASQNGRTRYSEQIKIDTETFGDFVRHRGGRGGRGGRSRGGYYGRGGGYGYSGRGRGRGGGGGGIPGRNL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00418 608 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cca06g00418 608 CDD LSm14_N 16 87 IPR025609 -
Cca06g00418 608 Gene3D - 6 92 - -
Cca06g00418 608 Pfam FDF domain 462 560 IPR019050 -
Cca06g00418 608 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 1 597 - -
Cca06g00418 608 ProSiteProfiles FFD box profile. 521 536 IPR025761 -
Cca06g00418 608 MobiDBLite consensus disorder prediction 563 608 - -
Cca06g00418 608 SMART FDF_2 461 563 IPR019050 -
Cca06g00418 608 MobiDBLite consensus disorder prediction 113 145 - -
Cca06g00418 608 MobiDBLite consensus disorder prediction 113 143 - -
Cca06g00418 608 MobiDBLite consensus disorder prediction 210 228 - -
Cca06g00418 608 MobiDBLite consensus disorder prediction 501 515 - -
Cca06g00418 608 ProSiteProfiles DFDF domain profile. 455 491 IPR025762 -
Cca06g00418 608 MobiDBLite consensus disorder prediction 361 410 - -
Cca06g00418 608 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cca06g00418 608 PANTHER SCD6 PROTEIN-RELATED 1 597 - -
Cca06g00418 608 MobiDBLite consensus disorder prediction 484 500 - -
Cca06g00418 608 MobiDBLite consensus disorder prediction 249 271 - -
Cca06g00418 608 ProSiteProfiles TFG box profile. 543 563 IPR025768 -
Cca06g00418 608 MobiDBLite consensus disorder prediction 484 518 - -
Cca06g00418 608 MobiDBLite consensus disorder prediction 361 459 - -
Cca06g00418 608 MobiDBLite consensus disorder prediction 200 228 - -
Cca06g00418 608 SMART LSM14_2 10 110 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00418 Cca-Chr6 13003032 13008993 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00418 06 13003032 13008993 Cca06g00418 06 13003032 13008993 ECH