Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00414 ATGATAGTCAGGTTAGGACTCATAGTTGCTGCTTCTCTTGCAGCCTTTACAGTTAAGCAGCTGAATGTCAGAAGCTCAAAACCAGAAAATGAAGAGGGCACAGAAGAGGATCATGTCACAAGAGTTACTAATGCTCTCCAAGACCAAGAAAGGGAAGAGGAAGAGGAGAAAGAGGAGGTTAAGTTAATTAGCAGCATAATTAATCGAGCGAATGACTTTGAAGAAGATATTCTACCAGAGTTTGAAGATCTTCTGTCTGGGGTGATTGAGTTTCCATTGCCACCTGATAAGGCTGAGAAAGACAAAGTTTATGAAATTGAGATGGCAAACAATGCAAGTGAGCTAGAAAGATTGCGGCGGCTAGTGCAGGAGTTGGAGGAGAGGGAAGTGAAACTTGAAGGAGAATTGCTTGAGTACTATGGTTTGAAGGAGCAGGAATCAGACATTGTGGAGTTACAAAGGCAACTGAAAATTAAGACTGTAGAAATAGACATGCTTAATATTACAATCAATTCCTTGCAGGCAGAAAGGAAGAAACTTCTAGAAGAACTCACACAAGGAGGTTCATCCAAGAGAGAACTTGAGGTGGCTAGAAACAAGATCAAGGAGCTACAAAGGCAGATACAGCTTGAGGCTAGCCAAACAAAAAGCCAGTTGTTGTTGCTTAAACAACAAGTTTCTGGTCTACAAGTGAAAGAAGAAGAGGCTGCCAGAAAAGATGCTCAACTTGAAAAGAAATTGAAAGCTGTGAATGACTTAGAGGTTGCGGTAGTTGAGCTTAAGAGACAAAACAAAGAACTTCAACATGAGAAGCGAGAGCTAATGGTTAAACTCAATGCTGCTGAATCTAGAGCAGCTGAGCTCTCCAATATGACAGAGAGTGACATGGTTGCCAAGGCAAAAGAGGAGGTTAGCAACCTGAGGCATGCAAATGAAGACCTGCTAAAGCAAGTGGAAGGGCTACAGATGAATAGGTTCAGTGAAGTTGAGGAGCTTGTATACCTTCGTTGGGTTAATGCATGTTTGAGGTATGAGCTAAGGAATTACCAGACACCCCAAGGAAAATTATCAGCACGTGATCTCAGCAAGAGTCTCAGCCCAAAATCACAAGAGAAGGCTAAGCAGCTGATGTTAGAATATGCTGGATCAGAACGTGGACAAGGGGACACAGATCTTGATAGCAACTTCTCTCATCCTTCTTCACCAGGAAGTGAAGACTTTGACAATGCTTCCATTGATAGCTCTACTAGCAAATATAGTAGTCTCAGCAAGAAAACTAGCCTAATCCAAAAATTTAAGAAATGGGGTAAAAGCAAAGATGATTCTAGTGCTCTTTCATCACCATCAAGATCCTTTTCAGGAGGTTCTCCAAGGAGAATGAGTATGAGTGTTAAACCTAGAGGTCCCCTAGAAAGCTTAATGCTAAGAAATGCCGGTGATAGTGTAGCCATCACCAGCTTTGGGCTAAGGGACCAAGAACCTACCGATTCTCCTGAAACACCAACTGACATGAAAAGAGTTCCATCTAGTGACTCCTTAAATTCTGTTGCTACTTCATTCCACTTGATGTCTAAGTCAGTTGATGGATCTCTGGATGAGAAGTACCCTGCGTATAAAGATCGCCACAAGTTGGCCTTGGCAAGGGAAAAACAACTTAAAGAAAAGGCTGAGAAAGCAAGAGTGTTGAAGTTTGGTGACAATTCAGGTTTGAGCATGACCAAGGCTGATAGAGGGAGTCCTATATCTTTGCCACCAAAGCTTACTCAAATAAAGGAGAAACCAGTTGTATCTGGCACTCCAAATGATCAATCTGAGGATGGAAAGAATGCTGATAATCAAACCATTAGCAAGATGAAGCTTGCTCACATTGAGAAAAGGCCTACTAGGGTGCCTAGGCCTCCTCCTAAACCATCTGGTGGTGCGGCTGTCAGCACAAATGCAAATCCTCCCAATGGAGTACCATCTGCTCCACCAATTCCTCCTCCTCCTCCAGGTGCTCCACTGCCACCGTTGCCGCCAGGTGGTCCACCTCCACCACCTCCTCCCCCAGGAAGCCTATCAAGAGGGGCAATGGATGGTGACAAAGTTCACCGAGCTCCGGAGCTAGTTGAATTTTATCAAACATTGATGAAAAGGGAGGCAAAGAAGGATACTTCATCACTTTTAGTTTCTTCAACAAGTAATGCATCTGATGCTAGGAGCAACATGATTGGCGAAATTGAGAATAGATCATCATTCCTCTTAGCTGTGAAAGCTGATGTAGAAACACAAGGTGATTTTGTCAATTCATTGGCAGCTGAAGTTCGAGCAGCCTCCTTCTCGGATATTAATGATCTGGTGGCCTTTGTGAACTGGCTAGATGAAGAGCTTTCCTTCCTGGTTGATGAACGAGCTGTCCTCAAGCACTTTGATTGGCCTGAAGGGAAAGCAGATGCACTAAGGGAGGCAGCTTTTGAATATCAAGATTTGATGAAATTGGAGAACAAAGTCTCCACCTTCATAGATGATCCCCAACTCCCATGTGAAGCTGCTCTGAAGAAAATGTATTCACTGCTTGAAAAAGTGGAGCAAAGCGTATATGCACTCTTGAGGACAAGAGATATGGCTATTTCACGGTACAGGGAATTTGGAATCCCAGTAAACTGGCTATTGGATTCAGGAGTTGTTGGCAAGATCAAGCTTTCTTCTGTACAACTAGCAAAGAAGTATATGAAACGCGTTGCATCTGAACTTGATGCATTATCTGGCCCTGAAAAAGAACCAGCTAGAGAGTTTTTGATTCTGCAAGGAGTGCGTTTCGCTTTCCGTGTCCATCAGTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGACCTAAGGAGTCGCATCCAAACCTCTCGAGCTAGTGAAGATATCAAATCAGAAATATAG 2919 0.433 MIVRLGLIVAASLAAFTVKQLNVRSSKPENEEGTEEDHVTRVTNALQDQEREEEEEKEEVKLISSIINRANDFEEDILPEFEDLLSGVIEFPLPPDKAEKDKVYEIEMANNASELERLRRLVQELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLLEELTQGGSSKRELEVARNKIKELQRQIQLEASQTKSQLLLLKQQVSGLQVKEEEAARKDAQLEKKLKAVNDLEVAVVELKRQNKELQHEKRELMVKLNAAESRAAELSNMTESDMVAKAKEEVSNLRHANEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPQGKLSARDLSKSLSPKSQEKAKQLMLEYAGSERGQGDTDLDSNFSHPSSPGSEDFDNASIDSSTSKYSSLSKKTSLIQKFKKWGKSKDDSSALSSPSRSFSGGSPRRMSMSVKPRGPLESLMLRNAGDSVAITSFGLRDQEPTDSPETPTDMKRVPSSDSLNSVATSFHLMSKSVDGSLDEKYPAYKDRHKLALAREKQLKEKAEKARVLKFGDNSGLSMTKADRGSPISLPPKLTQIKEKPVVSGTPNDQSEDGKNADNQTISKMKLAHIEKRPTRVPRPPPKPSGGAAVSTNANPPNGVPSAPPIPPPPPGAPLPPLPPGGPPPPPPPPGSLSRGAMDGDKVHRAPELVEFYQTLMKREAKKDTSSLLVSSTSNASDARSNMIGEIENRSSFLLAVKADVETQGDFVNSLAAEVRAASFSDINDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLENKVSTFIDDPQLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPVNWLLDSGVVGKIKLSSVQLAKKYMKRVASELDALSGPEKEPAREFLILQGVRFAFRVHQFAGGFDAESMKAFEDLRSRIQTSRASEDIKSEI 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00414 972 Coils Coil 243 291 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 24 57 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 651 686 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 485 513 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 25 57 - -
Cca06g00414 972 Coils Coil 297 324 - -
Cca06g00414 972 Coils Coil 39 66 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 353 371 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 594 616 - -
Cca06g00414 972 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 965 - -
Cca06g00414 972 Coils Coil 187 214 - -
Cca06g00414 972 Coils Coil 142 183 - -
Cca06g00414 972 Coils Coil 108 138 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 353 417 - -
Cca06g00414 972 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 965 IPR040265 -
Cca06g00414 972 MobiDBLite consensus disorder prediction 438 465 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 388 417 - -
Cca06g00414 972 Coils Coil 539 559 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 441 458 - -
Cca06g00414 972 MobiDBLite consensus disorder prediction 552 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00414 Cca-Chr6 12921455 12928245 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00414 06 12921455 12928245 Cca06g00414 06 12921455 12928245 ECH