Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00412 ATGTCTTCACTTGCGGCTGCTAGAGCGGACAACTTTTACTATCCTCCAGAATGGGAACCGAGTCAGGGTTCACTGAACAAGTTTCATGGTCAACATGCCTTGAGGGAGAGGGCAAGAAAATTGGATCAGGGTATCCTGATTATAAGGTTTGAGATGCCTTTTCATATATGGTGTGGAGGATGCAATTCAATGATTGCAAAAGGTGTTCGGTTCAATGCAGAGAAAAAACAAGTTGGAAATTATTACTCAACGAAGATATGGAGCTTTACTATGAAGTCTGCCTGCTGTAAACATGAGATTGTAATTCAGACCGATCCTAAGAATTGTGAATATGTCATTATTAGTGGGGCCCAGAAAAAAAATGAAGATTTTGATGTTGAGGATGCTGAAACTTTTGAATTACCTGCTGATGAAGAGAGGGGTAAGCTTGCAGATCCATTTTATCGCCTTGAACACCAGGAAGAGGATATGAAGAAAAAGAAGGAAGCTGAGCCAGTGCTTGTACGTCTCCAGCGGATGTCTGATACCAGGCATTCAGATGACTATTCTCTCAATAAGACTCTTCGGGCCCAGCTTAGAGGTCAAAAGAAAAGAGTTGCTGAAGAAGAGAATGCTTCCAGGAAAAGAGGCCTTGGCATAAGATTACTTCCAGCTACAGAACAAGATGCTGCCACAGCAAAACAAGTGAAGTTTCCAACCAAGTTTGACAAGAATAGGAAGGACAAGAGGGCATTGATCAGTGCTGGATCCATCTTCGCTGGAGTGTCTAGCTATTCAATGCCCGATAAGAGAAGACAAGACCTAGAGTCTAAACGAAGAAAAATTTCTGCATCTTCAGCGTCAAGCCTTCTAGCTGGTGGATTTAAGCCATCATCGTTGTCAAAGGGTGCTGTTTTGTCAAGCAGGCAAAAGGGTGGAGTTTCAGTGACTGTTATTGAAGGAATGAGTGAAAACATGATTCATCTCAAAAACATTGTGCCTGCAGCTCAGAACAACATAGACACTAAATTCATCCTTTTGGACAAAGGGAAAACCACAGTAGAAGGGCATAAGAAGATGTGCTTGGCCCTTGTGGCTGATGAAACTGCAGCTGTTCATTTTCAGTTTTGGGGAGACGAGTGTGATGCGTTTGATTCAGGTGACATAATTTGTCTTACCAATGGCATATTTTCATACCAGCACAGGAACCTTGTACTACGGGCAGGGAAGAGAGGGAAGCTAGTGAAGGTGGGGGAGTTTACTATGGCCTATGTTGAGACACCACATATGAGTGAGATTCATTGGATTCCTGACCCAAACAATTCTAAGAAATATGTCCAAGAATATGTAATATCTCCTGTGTCACGCATTTTTCCTCCTCTTCCTTCTGATATGTAA 1377 0.4241 MSSLAAARADNFYYPPEWEPSQGSLNKFHGQHALRERARKLDQGILIIRFEMPFHIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSACCKHEIVIQTDPKNCEYVIISGAQKKNEDFDVEDAETFELPADEERGKLADPFYRLEHQEEDMKKKKEAEPVLVRLQRMSDTRHSDDYSLNKTLRAQLRGQKKRVAEEENASRKRGLGIRLLPATEQDAATAKQVKFPTKFDKNRKDKRALISAGSIFAGVSSYSMPDKRRQDLESKRRKISASSASSLLAGGFKPSSLSKGAVLSSRQKGGVSVTVIEGMSENMIHLKNIVPAAQNNIDTKFILLDKGKTTVEGHKKMCLALVADETAAVHFQFWGDECDAFDSGDIICLTNGIFSYQHRNLVLRAGKRGKLVKVGEFTMAYVETPHMSEIHWIPDPNNSKKYVQEYVISPVSRIFPPLPSDM 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00412 458 Pfam Saf4/Yju2 protein 13 275 IPR007590 GO:0000398
Cca06g00412 458 PANTHER SPLICING FACTOR YJU2 1 305 IPR007590 GO:0000398
Cca06g00412 458 SUPERFAMILY Nucleic acid-binding proteins 316 431 IPR012340 -
Cca06g00412 458 Coils Coil 185 205 - -
Cca06g00412 458 PANTHER BNAA08G19540D PROTEIN 1 305 - -
Cca06g00412 458 Gene3D - 318 426 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00412 Cca-Chr6 12895229 12902893 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00412 06 12895229 12902893 Cca06g00412 06 12895229 12902893 ECH