Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00411 ATGGCAATGCCTTCACACCCTTCTCTCCTTTTCATGTTCATCACTCTCACTCTCACACATTTCTCCACCGCCACCCAATACCTCAAGCTACCCCTCCTCCCTCCGACCACCCTCCCCTCCGCCTCCAACCTCCTCGCCGCCGACCTCCGCCGTCTCACCTCCCCCATCAACTCCGGCGCCGCCACAGGCTCCGGGCAGTACTTCGCTGAGCTCCGGCTGGGGTCCCCGCCCCAGCGGCTCCTCCTGGTGGCGGACACGGGCAGCGACCTCCTCTGGGTGAAGTGCTCGGCCTGCCGCAACTGCTCCGCCCACCCGCCGGGGTCCGCCTTCCTCCCCCGCCACTCCTCCAGCTTCTCCTCCCACCACTGCTACGACTCGCCGTGTCAACTCGTTCCCCACCCGCGTCGTTGCAACAACCGAACCAAAATCCACACCCCGTGCCGCTACAAATATTCCTACGCGGACGCCTCCACCACAACGGGCTTCTTCTCCACCGAAACGACGACGTTCAACACTTCTTCCAAAAAACAAAGCACGCTCAAAAACCTCTCCTTCGGCTGCGCCTTTAAAATATCGGGCCCCAGCGTCACGGGCTCCACCTTCAACGGCGCGCAGGGCGTAATGGGCCTGGGCCGCGGCCCAATCTCCTTCACCTCCCAACTCGCCCGCGAATTCGGGAACACCTTCTCTTACTGTCTGCTCGACTACACCCTATCCCCGCCTCCCGTTAGTTACCTCACCATCGGCAACGACGTCGTTTCACGGAACGTTCTCACCTACACGCCGTTGCTCACCAACCCTATCTCTCCCTCCTTCTACTACGTCTCCGTCGAGAGCGTTTCCGTTGACGCCGTTAAGCTACCGATTCCTCGCTCCGTCTGGGCGATcgacgccgacggtaacggcggggccgtcgtcgactccggcaccacgcTCACCTTCCTCGCCGAGCCCGCTTACCGCCACGTCCTCGCCGCGTTCCGCCGCCGCCCGGTTCGACCGGGTTCGGGGTTTTCTGTTATTGGGAACTTGATGCAGCAAGGGTACTTGTTTGCGTTTGATTTGGACCGGTCGCGGATCGGGTTCTCGCGTCACGGATGTGCGGTTCGCTGA 1113 0.5912 MAMPSHPSLLFMFITLTLTHFSTATQYLKLPLLPPTTLPSASNLLAADLRRLTSPINSGAATGSGQYFAELRLGSPPQRLLLVADTGSDLLWVKCSACRNCSAHPPGSAFLPRHSSSFSSHHCYDSPCQLVPHPRRCNNRTKIHTPCRYKYSYADASTTTGFFSTETTTFNTSSKKQSTLKNLSFGCAFKISGPSVTGSTFNGAQGVMGLGRGPISFTSQLAREFGNTFSYCLLDYTLSPPPVSYLTIGNDVVSRNVLTYTPLLTNPISPSFYYVSVESVSVDAVKLPIPRSVWAIDADGNGGAVVDSGTTLTFLAEPAYRHVLAAFRRRPVRPGSGFSVIGNLMQQGYLFAFDLDRSRIGFSRHGCAVR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00411 370 SUPERFAMILY Acid proteases 61 367 IPR021109 -
Cca06g00411 370 Gene3D Acid Proteases 333 369 IPR021109 -
Cca06g00411 370 Pfam Xylanase inhibitor C-terminal 273 329 IPR032799 -
Cca06g00411 370 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 304 315 IPR001969 GO:0004190|GO:0006508
Cca06g00411 370 PANTHER OS07G0603500 PROTEIN-RELATED 335 369 - -
Cca06g00411 370 CDD pepsin_A_like_plant 66 367 IPR034161 -
Cca06g00411 370 PANTHER BNAA02G27600D PROTEIN 335 369 - -
Cca06g00411 370 PANTHER BNAA02G27600D PROTEIN 16 331 - -
Cca06g00411 370 PRINTS Pepsin (A1) aspartic protease family signature 304 315 IPR001461 GO:0004190|GO:0006508
Cca06g00411 370 PRINTS Pepsin (A1) aspartic protease family signature 73 93 IPR001461 GO:0004190|GO:0006508
Cca06g00411 370 ProSiteProfiles Peptidase family A1 domain profile. 67 370 IPR033121 -
Cca06g00411 370 PANTHER OS07G0603500 PROTEIN-RELATED 16 331 - -
Cca06g00411 370 Gene3D Acid Proteases 45 246 IPR021109 -
Cca06g00411 370 Gene3D Acid Proteases 247 332 IPR021109 -
Cca06g00411 370 Pfam Xylanase inhibitor N-terminal 67 250 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00411 Cca-Chr6 12886788 12888415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00411 50 329 Miscellaneous Gene Families AT1G77480 27.915 2.73e-21 92.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00411 06 12886788 12888415 Cca06g00411 06 12886788 12888415 ECH