Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00410 ATGAAAAAGGAATTAGAAGATCAAGGCCAGTGTTCCTCTCAACCAATCAATAACACCACCAACACCAACACCATCAACAACAACATTCAAAGCTTCCAAGAGCAACTTCTCATACAACAACAGATGCATCATCACCAGCAGCAACAAAACAGTGACATCTTTGGAGGCTCAAGAGGGTTAATGTTCCCTGATCAAGTTCCTCCAATCTTGCAACCATGGTCCATGCCTCCGGTTCACTCGTTCAACTCCAACCCGGTTCACTCATTCAACCCCAACCCGGTTCGGGACCATGACCAAACTTTCCTTGTCCCTCCCACACCTTCACCCTATGCAAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAGTTTGCATACGAGGGTCCCTCTTCTGATCACCATCATCTGAGGATCATATCTGACACACTTGGACCCATGGTTCAAACCGGTTCAGCCGCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCACAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCTGAAAGAAGACGTAGAGAGAGAATCAACAACCACCTTGCCAAGCTTCGCAGCTTGTTGCCTAACACAACCAAAACAGATAAAGCTTCACTATTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGCCAAACCTCACTGATAGCAGAAACGAGTCCAGTTCCTACAGAATCCGACGAGTTAACTGTGGATGCAGCAGACGAGGACGGAAAGTTTGTGATCAAAGCGTCACTGTGCTGTGAAGATAGGTCAGATCTCTTACCTGACCTCATCAAAACGTTGAAAGCCTTGAGACTGAGAACCCTCAAAGCCGAAATCACGTCGCTTGGAGGACGTGTGAAGAATGTGTTAGTCATAACTGGTGatgatgataataataataataaCTCAAACACCAATGGAGAGCAAAGCATGCAGCAGCAACAACAACAATATTGTATTAGCTCAATACAAGAAGCACTCAAGGCAGTGATGGAGAAGAGTGGTGGTGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAATACTAATAATAATATCAATATCCTTGAACAAAGGTCTTTATGA 1119 0.4504 MKKELEDQGQCSSQPINNTTNTNTINNNIQSFQEQLLIQQQMHHHQQQQNSDIFGGSRGLMFPDQVPPILQPWSMPPVHSFNSNPVHSFNPNPVRDHDQTFLVPPTPSPYASFFSRRVPSLQFAYEGPSSDHHHLRIISDTLGPMVQTGSAAFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDAADEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITSLGGRVKNVLVITGDDDNNNNNSNTNGEQSMQQQQQQYCISSIQEALKAVMEKSGGDESASGNVKRQRTNTNNNINILEQRSL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00410 372 MobiDBLite consensus disorder prediction 1 25 - -
Cca06g00410 372 CDD bHLH_AtAIG1_like 169 247 - -
Cca06g00410 372 Pfam Helix-loop-helix DNA-binding domain 177 223 IPR011598 GO:0046983
Cca06g00410 372 SMART finulus 180 229 IPR011598 GO:0046983
Cca06g00410 372 MobiDBLite consensus disorder prediction 340 372 - -
Cca06g00410 372 CDD ACT_UUR-ACR-like 259 303 - -
Cca06g00410 372 PANTHER TRANSCRIPTION FACTOR BHLH30 86 364 IPR045847 GO:0003700|GO:0006355
Cca06g00410 372 MobiDBLite consensus disorder prediction 349 372 - -
Cca06g00410 372 Gene3D - 169 230 IPR036638 GO:0046983
Cca06g00410 372 MobiDBLite consensus disorder prediction 8 25 - -
Cca06g00410 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 230 IPR036638 GO:0046983
Cca06g00410 372 MobiDBLite consensus disorder prediction 302 324 - -
Cca06g00410 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Cca06g00410 372 PANTHER TRANSCRIPTION FACTOR BHLH30 86 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00410 Cca-Chr6 12808296 12812863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00410 27 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.143 1.13e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00410 HLH 2.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00410 06 12808296 12812863 Cca06g00410 06 12808296 12812863 ECH