Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00405 ATGACTGTGTCGGCTTCGTTTCCTTCCATTTCCAAGAACCGTACTTTGGTCATTGGAGGAACTGGCTTCATGGGTCAGTTCATAACTAAGGCAAGCCTTGCCTTAGGGTACCCTACGTTTCTGCTCCTCAGGCCTGGCCCTGTCTCACCTTCCAAGGCTGCCATTGTCAAAACCTTTCAAGACAAAGGTGCTAAGGTCATCCATGGCGTCATAAATGACAAGGAATTGATGGAGAAGATTTTGAAGGAATATGAGATAGACGTGGTGATTTCTCTTGTAGGAGGTGAAAGATTGTTGGATCAGATTACATTGGTGGAGGCCATAAAATGTGTGAAGAGTGTGAAGAGGTTTGTGCCGTCAGAGTTTGGGCATGACGTGGACAGAGCAGATCCGGTAGAGCCAGGGCTGAGAATGTATAAAGAGAAGCGTTTGGTGAGGCGAATGGTTGAGGAGTATGGAATTCCTTACACAAACATATGCTGCAATTCCATTGCTTCTTGGCCTTATCATGACAATTGCCATCCAACCCAGCTTCCTCCACCACTCGATCGCTTTCAAATCTACGGTGATGGCAACGTCAAAGCATACTTCGTTGATGGCAATGATATTGGAAGGTTCACAATGTTGGCCATTGATGATATCAGAACGCTGAACAAAAACGTTCATTTTCGACCCGCCACTAACTGTTATTCTGTCAACGAGCTTGCTTCTTTATGGGAAAAGAAAATTGATCGTAAGATTCCCCGAGTCACCATCACAGGGGATGATCTTCTCGCCATAGCTGCAGAAAATTGTATACCCCAAAGTATTGTAGCATCCTTCACCCATGATATTTTCATCAACGGTTGCCAAGTTAACTTCAGCACAGATGGACCTAATGATACTGAGATTTGCACTCTATACCCAGATGAAAAATTCAGAACCTTGGAGGAATGCTACGAGGACTTTGTCCCCATGATCCATGACAAGAATAATATTCATGCAGGAACAAATGATGAAGTTAAAATTAATAATGACAGAAAGACTTTGGTAGAGACAGGAACAACCGAAGAAATTAAGGACATGAAGCCTTTGGTAGAGTCGGTGCCAATAACAGCTATGGGCTAG 1107 0.4381 MTVSASFPSISKNRTLVIGGTGFMGQFITKASLALGYPTFLLLRPGPVSPSKAAIVKTFQDKGAKVIHGVINDKELMEKILKEYEIDVVISLVGGERLLDQITLVEAIKCVKSVKRFVPSEFGHDVDRADPVEPGLRMYKEKRLVRRMVEEYGIPYTNICCNSIASWPYHDNCHPTQLPPPLDRFQIYGDGNVKAYFVDGNDIGRFTMLAIDDIRTLNKNVHFRPATNCYSVNELASLWEKKIDRKIPRVTITGDDLLAIAAENCIPQSIVASFTHDIFINGCQVNFSTDGPNDTEICTLYPDEKFRTLEECYEDFVPMIHDKNNIHAGTNDEVKINNDRKTLVETGTTEEIKDMKPLVESVPITAMG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00405 368 CDD PCBER_SDR_a 16 312 IPR045312 GO:0016491
Cca06g00405 368 Gene3D - 14 303 - -
Cca06g00405 368 PANTHER PINORESINOL REDUCTASE-RELATED 11 331 - -
Cca06g00405 368 Gene3D - 163 312 - -
Cca06g00405 368 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 316 IPR036291 -
Cca06g00405 368 Pfam NmrA-like family 16 247 IPR008030 -
Cca06g00405 368 PANTHER LEUCANTHOCYANIDIN REDUCTASE 11 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00405 Cca-Chr6 12684333 12689356 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00405 06 12684333 12689356 Cca06g00405 06 12684333 12689356 ECH