Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00403 ATGGCTGGAACGTCATGGTTGGTGGACAAAAGCAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCATGTAATCCTGGAAAGGTTATATGGAAAAGCAATCCTACTAAGGCTTGCCCAAATTGTCAACATACTATTGACAACAGTGATGTAGCACAAGACTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCCAGAGATAATCTGGCACTTGCTTGCAAAAGTTGGGGTGGGAGATTCAAAACCTCATCCCTTTATTGATGAATTTATTACTACTCTTGACGAGGATGATGGAATTTGCTATGCTCATCCTCAAAATTTGCCTGGTATTAAGCAAGATGGAAGTGCTTCCCACTTCTTCCATAGAGCAATCAAGGCTTACAACACTGGCACCCGAAAGCGCCGAAAGATACTTGGCCATGATTTTGGTGATGTCCGCTGGCACAAGACAGGAAGAACTAAACCAGTTGTCTTGAATGGGGTTCAAAAAGGCTGTAAAAAGATTATGGTTCTGTATCTGAGCAATGTAAAAGGAGGTAGAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAGGATGAAAAGGATGGGGAGTACATTATCTCAAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAAGATGACCAAGATGTTCCTGAAGCCATTGAAACCACTGAATCAACAATTGTGAAAGTAAGTCCAGTCACTCCCAAATCTGTGACTCCTGATCCTCCTTGTAATGAAAGGTTGCGTGCAGATCTAGACCTAGGACAAGAAACACTTAACATTCCTCAGCCTCCCCAGATGAATTATTTAGATGAAATTAATGCTGATTGCCCAGACCATGCAACCGAATCATCCATGTTTGAAAATCAACATAATGAAGGGATGGATGATAAAGAAAACAATGCTGAAGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTCGAGGCACTATCGCTGTGTGATGATTTACTCCATAGTCAGTCTCCCAGCAGAGATGGGAAACATGACGAACATAAGAACCAACCTGGTCTTTCTGTTTATGCTCAGCTTGGACCAGAACATCTGAAGAAGGACATTGAAGAGTGTCAAAATCTTGCCCTTGATCATGCAAATATAGAGCATGATACACCTTCAGAGTTTCGACTTAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTTCATGGGGCTACAGCAAGGCAGAGAAGTAA 1281 0.4192 MAGTSWLVDKSRIATKIKCASGACNPGKVIWKSNPTKACPNCQHTIDNSDVAQDWPGLPKGVKFDPSDPEIIWHLLAKVGVGDSKPHPFIDEFITTLDEDDGICYAHPQNLPGIKQDGSASHFFHRAIKAYNTGTRKRRKILGHDFGDVRWHKTGRTKPVVLNGVQKGCKKIMVLYLSNVKGGRAEKTNWVMHQYHLGTEEDEKDGEYIISKVFYQQQQVKLGDKDDQDVPEAIETTESTIVKVSPVTPKSVTPDPPCNERLRADLDLGQETLNIPQPPQMNYLDEINADCPDHATESSMFENQHNEGMDDKENNAEEGQKWWDSESQNLLDSQQLVEALSLCDDLLHSQSPSRDGKHDEHKNQPGLSVYAQLGPEHLKKDIEECQNLALDHANIEHDTPSEFRLSQLEFGSQDSFISWGYSKAEK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00403 426 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Cca06g00403 426 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 420 - -
Cca06g00403 426 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 420 IPR044799 GO:0003700
Cca06g00403 426 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Cca06g00403 426 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Cca06g00403 426 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00403 Cca-Chr6 12577596 12582628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00403 14 223 NAC Transcription Factor Family AT1G28470 51.142 1.02e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca06g00403 NAM 2.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00403 06 12577596 12582628 Cca06g00403 06 12577596 12582628 ECH