Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00401 ATGGCCACTGTTGCAACCAGAGGAATTGGAGTAGGAGTGACAAAGCTCCAACCCCACAAACCAAAGCACAACAAGTCCTTGTTCCTTGGCCAGAGGCTTAGGATTAGACCCTCTGGGGAGGCTCAATGCGGTGCAAGTTTCAGTGTCTCAAACCCAAAAGTGGTTCAAGTTTTTGCACTAGGGGGTGAATGGGTTGACACAGTTCACAACCTCTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGTGATGTGATCTATAGGAGCACTCTTCCCCGGTCTAGTGGCTTGACACTTACTGTCCCTGGGGTGGTTCTGGCTTTGGGGACTCTATCTTATCTTTGGGCCACACCTGGTGTAGCACCTGGTTTCTTTGACATGTTTGTTCTTGCTTTTGTTGAGAGGTTGTTCAGACCTACTTACAAAAAGGATGATTTTGTTCTGGGGAAGAAGTTGGGGGAGGGGTCATTTGGAGTGGTATATAGAGTGTCACTGGCCAACAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCAACTGAATATGGTGCTGTAGAAATTTGGATGAACGAGCGTGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTCGTTTATGGTTTTCTTGAGAGCTCTTCAAAGAAGGCTGCTGAATACTGGATTATATGGCGGTTTGAAGGAGATTCCACCCTAGCTGACTTGTTGCAGAATAGAGAGTTTCCATATAATGTTGAAACATTGATTTTGGGTGAGGTCCAAGACTTGCCCAAAGGATTGGAAAGAGAAAATAGAATCATTCAAACAATCATGAGGCAGATATTGTTTGCACTTGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCTGAAGAGTCTCGGACATTCAAAATCATTGATCTTGGAGCTGCAACAGATCTGCGAGTTGGCATCAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATCATGAGCACGCAAACTCCGTCAGCGCCCTCAGTTCCAGTTGCAACTGCACTTTCCCCAGTCTTGTGGCAGTTGAATTTGCCTGACAGGTTTGATATCTATAGTGCTGGTTTAATCTTCCTTCAAATGGCATTCCCCAGTTTACGCTCTGATAATAGCCTCATACAATTCAACCGTCAATTAAAGAGATGTGACTATGACTTGGTTGCATGGAGAAAAACTGTAGAGCCTCGATGTGGCCCTGAACTGAGGAAAGGCTTTGAGATGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTGAAATCAATGGTAAGGTACAAAGCAAGACAACGACTGAGTGCAAAATCAGCATTAGCTCATCCTTATTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGGCTGCAGCTCCTACGTGCAACTCAGCAGGACTATGGAGAAGCTGCCAAGTGGATTACTAACCTAATGGCAAAATCAGGGACACAGAAAGATGGTGGATTCACTGAAGCACAGCTTCAGGAACTGAGAGAAATTGAGCCTAAAATTTCAAAGAAAGCTAATGCACAGAGAAATGCTCTAGCTTCAGCCCTTAAACTTCAGAGGAAGATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAGGAATGA 1743 0.4452 MATVATRGIGVGVTKLQPHKPKHNKSLFLGQRLRIRPSGEAQCGASFSVSNPKVVQVFALGGEWVDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPRSSGLTLTVPGVVLALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKAAEYWIIWRFEGDSTLADLLQNREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPSLRSDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGPELRKGFEMLDLDGGIGWELLKSMVRYKARQRLSAKSALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKISKKANAQRNALASALKLQRKIIRTLNESMDELNRRRKSFWWSRWIPREE 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00401 580 Pfam Protein kinase domain 151 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00401 580 ProSiteProfiles Protein kinase domain profile. 150 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00401 580 Coils Coil 546 566 - -
Cca06g00401 580 ProSitePatterns Protein kinases ATP-binding region signature. 156 183 IPR017441 GO:0005524
Cca06g00401 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Cca06g00401 580 SUPERFAMILY Protein kinase-like (PK-like) 135 470 IPR011009 -
Cca06g00401 580 SMART serkin_6 150 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00401 580 Gene3D Transferase(Phosphotransferase) domain 1 259 472 - -
Cca06g00401 580 CDD STKc_SNT7_plant 154 468 - -
Cca06g00401 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 13 580 IPR044803 GO:0004674|GO:0009579
Cca06g00401 580 Gene3D Phosphorylase Kinase; domain 1 136 230 - -
Cca06g00401 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 13 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00401 Cca-Chr6 12512420 12518502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00401 268 469 Core Cell Cycle Gene Families AT2G38620 29.577 1.41e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Cca06g00401 Pkinase 4.6e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00401 06 12512420 12518502 Cca06g00401 06 12512420 12518502 ECH