Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00398 ATGTCTCTCTTTCTCACTCTCTCCTTCTTCTTATGCTTCCTCTTCACCACCGCTGGGAACACTCTTGCTCCTCCCTCACCCTCATTCCCACACGGTCTTGCTTACCACATCGACTGCGGCAGTCCAACGAACAGCACTGACCCGTTTAACACCACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCCGCCGCGATCGTGTCGGAGCCGCTGCGCTTCCGTCACGCGCACGAGAAGACGCTCCGCTACTTCCCAATCTCCTCCGGGAAGAAGAACTGCTACGCAATTCCCTCGCTGCCGCCCTCGCGCTACCTCCTCCGCACGTTCGTCGTCTACGACAACTACGACGGCAAGTCGCACCCTCCCTccttcgacgtcgccgtcgccggcaccgtcgtcttctcctggcgctccccgtggccccagtccgtcgcgcgcgacggcgcctacgctgacctcttcgccgCATTCGCTTCCTCCGAAGCCCTAATTTGCTTCTACAGCTTCGCCACCGACCCTCCGGTGGTCTCCTCGATCGAGCTCTTCGCCGCCGATCCGGCCTCCTACGACGTCGCCGCCATCGGCGACAACGGAACGGTGCTCGTCAACTACGGGAGGCTCTCCTGCGGCTCCGACCAGTGGGGGCCGGGGTTCTCCAACGACTCTGACCGGTTCGGCCGCTCGTGGCAGTCCGATTCGGAGTTCCGAACCGGCCGGAGCAGGGTCGTCGCCGTGTCCACGCGGAATGGCATCAGCGGGACCGATCAGAAGCCGAATTACTTCCCGGAGAAGCTGTACCAGAGCGCCGCCGCGACGGCGGCGACGGCCGAGGAGGGTGACGGGGTTTTGGAGTACGAATTGAGCGTGGACGCGAAGCTTGATTACTTGGTGTGGCTGCATTTTGCGGAGATTGAAGGGAGGGTGAGGAGGGCCGGGGAGAGGGTGTTTGATGTGTTCATCAATGATGAGAATTTGACTAGGGTTGATATTTACAAGCAAGTAGGGGGTTTTGCTGCGTTTACTTGGCATCACACGGTGAAGAATTTGAGTAGCAGCATGTTAAGCGTGAAGCTTGTGGGGGTGGTGGGTGCGCCTTTGATTTGTGGGATTGAGAATTATGCTTTGGTGCCTAGTGATCCTTCCACAGTTCCTCAACAAGTGGTTGCCATGAAAGCATTGAAAGACTCGCTCAGGGTTCCTGAAAGAATGGGTTGGAATGGAGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACATGCCGTATGAGCAAGGATAATACTGCTCTTGTGATAAGTCAAATTGATTTGGGCAGTCAAGGCTTGAAAGGGTTCATAAGTGACCAGATTAGTCTTTTGTCAGACTTGGTAAGCCTGAACTTGAGTTCTAATTTGTTGGTCGGTGATATACCTTTGGGACTCGGGCAGAAATCCCTTATACACCTGGACTTGTCCAGCAATCAGTTAACAGGCTCCATACCAGATAGTATAGCCTCTTCAGGTTTGCAGCTCGTGTAA 1524 0.5164 MSLFLTLSFFLCFLFTTAGNTLAPPSPSFPHGLAYHIDCGSPTNSTDPFNTTWLSDRYFSGGAAAIVSEPLRFRHAHEKTLRYFPISSGKKNCYAIPSLPPSRYLLRTFVVYDNYDGKSHPPSFDVAVAGTVVFSWRSPWPQSVARDGAYADLFAAFASSEALICFYSFATDPPVVSSIELFAADPASYDVAAIGDNGTVLVNYGRLSCGSDQWGPGFSNDSDRFGRSWQSDSEFRTGRSRVVAVSTRNGISGTDQKPNYFPEKLYQSAAATAATAEEGDGVLEYELSVDAKLDYLVWLHFAEIEGRVRRAGERVFDVFINDENLTRVDIYKQVGGFAAFTWHHTVKNLSSSMLSVKLVGVVGAPLICGIENYALVPSDPSTVPQQVVAMKALKDSLRVPERMGWNGDPCAPTNWDAWEGVTCRMSKDNTALVISQIDLGSQGLKGFISDQISLLSDLVSLNLSSNLLVGDIPLGLGQKSLIHLDLSSNQLTGSIPDSIASSGLQLV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00398 507 Gene3D Ribonuclease Inhibitor 385 505 IPR032675 -
Cca06g00398 507 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 14 507 - -
Cca06g00398 507 ProSiteProfiles Leucine-rich repeat profile. 480 502 IPR001611 GO:0005515
Cca06g00398 507 SUPERFAMILY L domain-like 382 500 - -
Cca06g00398 507 Pfam Malectin-like domain 37 374 IPR024788 -
Cca06g00398 507 Gene3D - 205 374 - -
Cca06g00398 507 Gene3D - 31 185 - -
Cca06g00398 507 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 14 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00398 Cca-Chr6 12403159 12410708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00398 39 506 Receptor kinase-like Gene Family AT2G14440 28.169 8.40e-34 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00398 06 12403159 12410708 Cca06g00398 06 12403159 12410708 ECH