Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00396 ATGGCGCTCACCGCTTCGCTCGCACACAACGCATTTCCGAAATTCCCAACACCCTTCCATGGCGAAGCCTCACCATCTTCTTCATCCTTTATGGGTTCTTCGCTTACACTCTCGCGCTCTTCCTCCCTTACCGGGAACCAATCACTTTCGAGAAAGCAATTCGTGGTTCTCGCCAGGAAGATTACAGGGTTGGAAGAGGCCATGAATATCAGAAGAGAACGGGAACTTAAAGTTGTGACAAAGGTTAAGAAAAGGCCTCCATTAAGGCGTGGGAGAGTATCTCCTCGTCTCCCTGTCCCTGATCACATACCAAGGCCTCCTTATGTAGGTTCAGATATACTTCCAGAAATTGCAAGTGAGCATCAAATTCATGATTCTGAAGGTATAGCTAAGATGAGGGCTGCATGTGAGCTTGCAGCACGTGTCTTAAACTTTGCAGGAACTTTGGTTAGGCCTTCTGTAACAACTAATGAGATTGATAAGGCAGTGCACCAGATGATAATCGACTCCGGTGCTTATCCCTCACCCCTTGGCTATGGTGGATTTCCAAAAAGTGTGTGCACATCAGTTAATGAGTGCATGTGCCATGGAATACCTGATTCTCGGCAGTTACAGAATGGTGATATTATTAACATTGATGTGACAGTCTACCTGGATGGATATCATGGAGACACATCAAAGACATTTTATTGTGGCGATGTCAGTGATGAACTGAAAAACCTTGTTAAGGTAACCGAGGAGTGCTTGGAGAAGGGAATAGCTGTGTGCAAGGATGGTGCTCTTTTTAGGAAAATTGGAAAGAGAATCAGTGAACATGCTGAAAAGTATGGCTATGGTGTAGTGGAGCGTTTTGTTGGGCATGGTGTGGGAACAGTGTTCCATTCTGAACCAATTATTATACATCATCGCAATGACAAAGCAGGTTGTATGGTTGAAGGTCAAACATTTACAATTGAGCCTATTCTTTCCATGGGAAGCATTGATTCCATTACATGGCCCGACAACTGGACAACATTAACAGCTGATGGTAGTCCGGCTGCACAATTTGAGCATACCATTTTGATAACTAGGACTGGTGCCGAAATTTTGACAAAATGTTGA 1101 0.4432 MALTASLAHNAFPKFPTPFHGEASPSSSSFMGSSLTLSRSSSLTGNQSLSRKQFVVLARKITGLEEAMNIRRERELKVVTKVKKRPPLRRGRVSPRLPVPDHIPRPPYVGSDILPEIASEHQIHDSEGIAKMRAACELAARVLNFAGTLVRPSVTTNEIDKAVHQMIIDSGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQNGDIINIDVTVYLDGYHGDTSKTFYCGDVSDELKNLVKVTEECLEKGIAVCKDGALFRKIGKRISEHAEKYGYGVVERFVGHGVGTVFHSEPIIIHHRNDKAGCMVEGQTFTIEPILSMGSIDSITWPDNWTTLTADGSPAAQFEHTILITRTGAEILTKC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00396 366 Gene3D Creatinase/methionine aminopeptidase superfamily 86 366 IPR036005 -
Cca06g00396 366 TIGRFAM met_pdase_I: methionine aminopeptidase, type I 123 365 IPR002467 GO:0006508|GO:0070006
Cca06g00396 366 Pfam Metallopeptidase family M24 131 356 IPR000994 -
Cca06g00396 366 PRINTS Methionine aminopeptidase-1 signature 186 199 IPR001714 -
Cca06g00396 366 PRINTS Methionine aminopeptidase-1 signature 208 224 IPR001714 -
Cca06g00396 366 PRINTS Methionine aminopeptidase-1 signature 278 290 IPR001714 -
Cca06g00396 366 PRINTS Methionine aminopeptidase-1 signature 308 320 IPR001714 -
Cca06g00396 366 CDD MetAP1 129 365 IPR002467 GO:0006508|GO:0070006
Cca06g00396 366 PANTHER METHIONINE AMINOPEPTIDASE 16 365 - -
Cca06g00396 366 SUPERFAMILY Creatinase/aminopeptidase 81 365 IPR036005 -
Cca06g00396 366 MobiDBLite consensus disorder prediction 14 43 - -
Cca06g00396 366 PANTHER METHIONINE AMINOPEPTIDASE 16 365 - -
Cca06g00396 366 MobiDBLite consensus disorder prediction 21 43 - -
Cca06g00396 366 Hamap Methionine aminopeptidase [map]. 121 366 IPR002467 GO:0006508|GO:0070006
Cca06g00396 366 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 284 302 IPR002467 GO:0006508|GO:0070006
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00396 Cca-Chr6 12293320 12305887 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00396 06 12293320 12305887 Cca06g00396 06 12293320 12305887 ECH