Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00393 ATGCAAACTCACTCTTTCTCCTACATACCCTCTTGTCCTACTAGTAGAAGTCCCTTCTTGGAACCTGACCATGATGAGGGTGTGGATGAAGCCTCCATCTCCCTCTCTCTTGGCCCTCCTGGCCAACACCACAACCCCAAAGCCACTTCCTCCTCCTCCTCCAACCACCCTTCCAGTACTCTTCAGTACCATTTCCAGCAAAACCCTATCTCTGATGACCAGAGAGGTGTAACTGTGGCTCTTCACATTGGCCTTCCCAGTCCAAGCACTTCACCAAACAGTGCCATCCCCACTACCAAGCCTGATCTTCATTTGCCTTCTGCTCCCATTCAGGGCCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTTTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACATGGTTCACAATACAGGAAAGGGCCTGAATCACTGAGAGGGGCAAAACCAGCTTCTTCAATGCTGAGGCTTCCCTGCTATTGTTGTGCCGAGGGTTGCAAGAACAACATAGACCATCCAAGGTCAAGGCCTCTGAAGGATTTCAGGACCCTTCAGACACACTACAAGAGGAAGCATGGAGCAAAGCCATTCGGGTGCAGAAAGTGTGGCAAGCCATTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCATCTGTGGCTCTGATTTCAAGCACAAGAGATCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCATGCTCCACACACTGTGGAGAGCTGTGATCAGATGGGGGAAGATGACTTGTTAGGTGATGAAGATGATGAGGAACTAGAACTAGAAGATGATGATGAAGATTATAACAGTAATGATGTTGTTTTTGGTTTTAATTAA 930 0.4849 MQTHSFSYIPSCPTSRSPFLEPDHDEGVDEASISLSLGPPGQHHNPKATSSSSSNHPSSTLQYHFQQNPISDDQRGVTVALHIGLPSPSTSPNSAIPTTKPDLHLPSAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQMGEDDLLGDEDDEELELEDDDEDYNSNDVVFGFN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00393 309 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Cca06g00393 309 Gene3D Classic Zinc Finger 169 260 - -
Cca06g00393 309 MobiDBLite consensus disorder prediction 43 61 - -
Cca06g00393 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Cca06g00393 309 SUPERFAMILY beta-beta-alpha zinc fingers 106 150 IPR036236 -
Cca06g00393 309 PANTHER ZINC FINGER PROTEIN WIP6 4 299 - -
Cca06g00393 309 MobiDBLite consensus disorder prediction 277 302 - -
Cca06g00393 309 PANTHER ZINC FINGER PROTEIN WIP2 4 299 IPR043584 GO:0003700|GO:0010468
Cca06g00393 309 MobiDBLite consensus disorder prediction 1 61 - -
Cca06g00393 309 MobiDBLite consensus disorder prediction 277 301 - -
Cca06g00393 309 SUPERFAMILY beta-beta-alpha zinc fingers 197 234 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00393 Cca-Chr6 12208819 12210606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00393 29 270 C2H2 Transcription Factor Family AT1G13290 71.600 1.21e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g00393 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00393 06 12208819 12210606 Cca06g00393 06 12208819 12210606 ECH