Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00390 ATGCAATTCAACCAGAAAATGGGGTTACGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATCCAAGTTTTCACCAAGGAGCTTCCTCTGTCGTTGGAGCTTGTAACGCAAGCCATTGAAGCGTGTAGGCAGCAATTGTCAGGAACGGTTGCGGAGTACAATTTGAATGGGCAATCGGAGTGTTCGGAGCAGACATCAATGGGTGAAGGACCTGTTTTTGAGGAGTTCATTCCTTTAAAGAAAAGGGTATCTCAAGATTCTGTTGAACAAgaagatgaagatcatgatgaagatgaagatgaagatgaagatgaTGAACAACATTCTCATAGCCCCAAGAACACTGATAGAAAGAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCCCCTCCTACCAAAGAGGATGTGCCTAGGAAAACAAATGTTGTGGAAGTGAAGAGAAACTGTGGAGCTTTTCAACCTTTTCATAGAGAGGAAAAAAGTGGTGTTGCAAAGGCTAATGCATCAACAAATGGTAAAGCACCCTCTTCACCACCAGTGCCTGCCACAAGTTCTACAGGACCAGTGAGAGTAGAGAGCAAAAGAGAGGAGAAATCACAGACTCAGAGGAAGCCACGCAGGTGCTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTCTGCCACGCCAAAACAGATCAGGGAGCAAATGAAGGTTGATGGCCTCACCAATGATGAGGTCAAAAGCCATTTGCAGAAATTTCGTTTGCACACGAGAAGAAGCCCTATACACAACAATGGTAGTTCACATGGAGCTCCATTGTTTCTTGTTGGGAACATTTTTGTGCAGCCACCAGAATATGGCACCTCAACAGCATCTGGAGGGGAATTGACCACAGTTACTCCTCCAACTGGAATATATGCTCCTGTGGCTACACACCCTCCACCAATCATGAAGCAATTAGATGTGTCTCAGCATTCACAGTTACACTCTGAAGAAAGGGCTAATCACAGTTTTCATTCAAACTCACCTGCCTCATCATCCTCCACACACACCATCACAACAACAACTTCACCTGCTCCTTGA 1110 0.4369 MQFNQKMGLREYIEALEEERRKIQVFTKELPLSLELVTQAIEACRQQLSGTVAEYNLNGQSECSEQTSMGEGPVFEEFIPLKKRVSQDSVEQEDEDHDEDEDEDEDDEQHSHSPKNTDRKKSDWLRSVQLWNPNPPPTKEDVPRKTNVVEVKRNCGAFQPFHREEKSGVAKANASTNGKAPSSPPVPATSSTGPVRVESKREEKSQTQRKPRRCWSQELHKRFLHALQQLGGADSATPKQIREQMKVDGLTNDEVKSHLQKFRLHTRRSPIHNNGSSHGAPLFLVGNIFVQPPEYGTSTASGGELTTVTPPTGIYAPVATHPPPIMKQLDVSQHSQLHSEERANHSFHSNSPASSSSTHTITTTTSPAP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00390 369 Coils Coil 9 29 - -
Cca06g00390 369 SUPERFAMILY Homeodomain-like 207 268 IPR009057 -
Cca06g00390 369 MobiDBLite consensus disorder prediction 80 123 - -
Cca06g00390 369 MobiDBLite consensus disorder prediction 128 147 - -
Cca06g00390 369 MobiDBLite consensus disorder prediction 170 195 - -
Cca06g00390 369 MobiDBLite consensus disorder prediction 332 369 - -
Cca06g00390 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Cca06g00390 369 MobiDBLite consensus disorder prediction 196 213 - -
Cca06g00390 369 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Cca06g00390 369 Gene3D - 209 267 - -
Cca06g00390 369 MobiDBLite consensus disorder prediction 108 123 - -
Cca06g00390 369 MobiDBLite consensus disorder prediction 92 107 - -
Cca06g00390 369 MobiDBLite consensus disorder prediction 346 369 - -
Cca06g00390 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Cca06g00390 369 MobiDBLite consensus disorder prediction 159 213 - -
Cca06g00390 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 363 IPR044787 GO:0003700|GO:0006355
Cca06g00390 369 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 7 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00390 Cca-Chr6 12118000 12121139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00390 1 324 G2-like Transcription Factor Family AT1G68670 47.550 2.71e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca06g00390 Myb_DNA-binding 2.3e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00390 06 12118000 12121139 Cca06g00390 06 12118000 12121139 ECH