Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00384 ATGGGACCTCTCACTTACCTCTTCCCACTCTTCCTCCTCTTTTGCTCAACACACTCACGAACCACACCACAACCCCCCAAAACGACAGTCCTCGACGTCGTTTCCTCCCTTCGAAACGCGCACAATGTCGTCGGCTTCCCTCAAAAACGACAACAAGAACCGTCGCTACTATCGTCGTTCGCTATTCACTTACACTCCCGCGCCTCAATCCAAAAACCCTCCCACCGCGACTACGAATCGTTAACACTCACGCGACTCGCGCGCGACTCAGCCCGAGTCAAAGCCCTGCAAACTCGCCTGGATCTCGCGCTGAACCGCGTCTCCAACTTGGACCTCCACCCGGCCGAGTCGGCCTCCGAGTTGGAGTTCGAGTCCAACGCGCTGCAAGGCCCAATCGTGTCGGGAACGAGTCAGGGAAGCGGCGAGTACTTCCTCCGAGTCGGAATCGGAAAACCAGTGAGTCAGGCCTACGTGGTGCTCGACACGGGAAGCGACGTGAGTTGGATCCAATGCGCGCCATGCTCCGAATGCTACCAACAATCCGACCCGATTTTCGACCCGGTTTCGTCGTCCTCCTACGCGCCGATCCACTGCGACGCGCCGCAGTGCAAGTCCCTGGACCTCTCCGAGTGCCGCAACGGAACTTGCCTCTACGAGGTCTCCTACGGCGACGGATCCTACACCGTCGGCGAGTTCGCCACCGAGACGGTGACTCTCGGCGGCGCCTCCGTCAGCAACGTCGCCATCGGCTGCGGCCACAACAACGAAGGACTATTCGTCGGCGCCGCCGGCCTGCTCGGCCTCGGCGGCGGAGCGCTCTCGTTTCCGGCGCAGGTTAACGCGACGTCGTTTTCGTACTGCCTCGTCGACCGCGACTCCGACGCCGTCTCAACGCTCGATTTCGACTCGCCGTTGCCGCGCAACGCCGTCACGGCGCCGTTACTGCGGAACCCCGAGCTTGACACGTTCTACTATCTCGGACTGAAGGGGATCAGCGTGGGCGGCGAGGCTCTCCCAATTCCCGACGCGAGCTTCGAGGTCGACGCCAGCGGCGGCGGCGGCATCATCGTGGACTCCGGCACGGCGGTGACGAGGCTGCGGAGCGAGGTGTACGACGCGCTGAGAGACGCGTTTGTGAGAGGGACGAAGGCGTTGCCGAAGGCGAACGGCGTGTCGTTGTTCGACACGTGCTACGACTTGTCGTCGAGGAACAGTGTGGAGGTTCCGACGGTGTCGTTTAGGTTCCCCGAGGGGAGGGAGTTACCGTTACCAGCGACGAATTACCTGATACCGGTTGACTCGGTGGGGACCTTTTGTTTGGCGTTCGCGCCCACGACGTCGTCTTTGTCAATCATTGGTAACGTGCAGCAGCAGGGGACACGTGTCGGTTTCGATATCGCTAACTCGCTCGTTGGATTCGCTGCCAATAGCTGCTAG 1437 0.6117 MGPLTYLFPLFLLFCSTHSRTTPQPPKTTVLDVVSSLRNAHNVVGFPQKRQQEPSLLSSFAIHLHSRASIQKPSHRDYESLTLTRLARDSARVKALQTRLDLALNRVSNLDLHPAESASELEFESNALQGPIVSGTSQGSGEYFLRVGIGKPVSQAYVVLDTGSDVSWIQCAPCSECYQQSDPIFDPVSSSSYAPIHCDAPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGGASVSNVAIGCGHNNEGLFVGAAGLLGLGGGALSFPAQVNATSFSYCLVDRDSDAVSTLDFDSPLPRNAVTAPLLRNPELDTFYYLGLKGISVGGEALPIPDASFEVDASGGGGIIVDSGTAVTRLRSEVYDALRDAFVRGTKALPKANGVSLFDTCYDLSSRNSVEVPTVSFRFPEGRELPLPATNYLIPVDSVGTFCLAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFAANSC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00384 478 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 158 169 IPR001969 GO:0004190|GO:0006508
Cca06g00384 478 Pfam Xylanase inhibitor C-terminal 324 474 IPR032799 -
Cca06g00384 478 PANTHER ASPARTYL PROTEASES 30 478 IPR001461 GO:0004190|GO:0006508
Cca06g00384 478 CDD cnd41_like 142 478 IPR033873 -
Cca06g00384 478 Gene3D Acid Proteases 116 300 IPR021109 -
Cca06g00384 478 ProSiteProfiles Peptidase family A1 domain profile. 143 474 IPR033121 -
Cca06g00384 478 Pfam Xylanase inhibitor N-terminal 143 299 IPR032861 -
Cca06g00384 478 Gene3D Acid Proteases 303 478 IPR021109 -
Cca06g00384 478 SUPERFAMILY Acid proteases 136 478 IPR021109 -
Cca06g00384 478 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 30 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00384 Cca-Chr6 11912074 11914337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00384 115 478 Miscellaneous Gene Families AT1G77480 25.307 1.38e-22 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00384 06 11912074 11914337 Cca06g00384 06 11912074 11914337 ECH