Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00380 ATGGATACAGGGCAGCAGATGATGTACCACAAGGGAGTGGCTATGGTAGCCTTGCCTTTGGGGAATGGTCATGTTGAAAATTGGGCTGATTCAGGCTTAGCAGATAATAGCCAACAGACTGATGATACTTCCACAGATATTGACACTGATGTTAAAATCCAATGCAACAGAGTTAAGAATGGGGCACAAATGGTTGTGCACTCCAAGGATCAGACAAAGGACAAAGTTGAAGATCAAAAGACCCTCCGTAGGCTGGCTCAGAATCGAGAGGCTGCAAGGAAGAGTAGGCTTAGGAAAAAGGCATATGTGCAGCAGTTGGAAAACAGCCGAGTCAAGCTTGTGCAATTAGAGCAAGAACTTCAACGAGCACGACAGCAGGGTATATTTATTGCCAATCAAGGTGATCAAGGTCATTTGGCTGTTGGAAATGGTGCCTTGGCGTTTGACATAGACTATGCTCACTGGGTTGATGAGCATCAACGTATGCTCAATGATCTAAGAACAGCTGTAAATTCTCAGATCAGTGATAATGAATTACATCTTCTAGTTGATGGTGTCATTGCACATTACAATGAGTTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTAATGGGATGTGGAAAACGCCTGTCGAACGATGGTTTATGTGGCTTGGTGGATTTCGTTCATCTGAACTTCTCAAGATCATTAAGAACCACCTTGAGCCATTAACAGATCAGCAGTTGATGGGCATTTGTAATCTGCAACAATCTTCCCAGCAGGCTGAGGATGCTTTGACTCAAGGCATGGAAGCATTGCAACAATCTCTTGTGGAAGCACTTTCCTCCACCTCGCTAGGACCCACTGGTAGTGCAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGGGAAAGCTTTCTGATCTGGAGAGTTTCCTTCATCAGGCTGACGTCTTGAAGCACCAAACTCTTCAACAGTTGCAGCGAATTCTGACAACACGACAAACAGCTCGAGCCCTCCTTGTCAGAAATGACTACATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCTCGTCCTAGAGAGTAG 1095 0.442 MDTGQQMMYHKGVAMVALPLGNGHVENWADSGLADNSQQTDDTSTDIDTDVKIQCNRVKNGAQMVVHSKDQTKDKVEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRVKLVQLEQELQRARQQGIFIANQGDQGHLAVGNGALAFDIDYAHWVDEHQRMLNDLRTAVNSQISDNELHLLVDGVIAHYNELFRLKSIGAKADVFHILNGMWKTPVERWFMWLGGFRSSELLKIIKNHLEPLTDQQLMGICNLQQSSQQAEDALTQGMEALQQSLVEALSSTSLGPTGSANVADYMGQMAIAMGKLSDLESFLHQADVLKHQTLQQLQRILTTRQTARALLVRNDYISRLRALSSLWLARPRE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00380 364 ProSiteProfiles DOG1 domain profile. 145 361 IPR025422 GO:0006351|GO:0043565
Cca06g00380 364 MobiDBLite consensus disorder prediction 29 48 - -
Cca06g00380 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 122 IPR004827 GO:0003700|GO:0006355
Cca06g00380 364 Gene3D - 79 129 - -
Cca06g00380 364 Pfam bZIP transcription factor 80 119 IPR004827 GO:0003700|GO:0006355
Cca06g00380 364 CDD bZIP_HBP1b-like 80 131 - -
Cca06g00380 364 SUPERFAMILY Leucine zipper domain 80 123 IPR046347 GO:0003700|GO:0006355
Cca06g00380 364 PANTHER TRANSCRIPTION FACTOR TGA9 1 364 - -
Cca06g00380 364 Pfam Seed dormancy control 163 237 IPR025422 GO:0006351|GO:0043565
Cca06g00380 364 SMART brlzneu 76 145 IPR004827 GO:0003700|GO:0006355
Cca06g00380 364 Coils Coil 99 133 - -
Cca06g00380 364 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 364 - -
Cca06g00380 364 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00380 Cca-Chr6 11819372 11825042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00380 1 364 bZIP Transcription Factor Family AT1G68640 65.217 7.83e-161 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca06g00380 DOG1 3.5e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00380 06 11819372 11825042 Cca06g00380 06 11819372 11825042 ECH