Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00373 ATGAGGTGCACCCTAGGATTCGAAGGACTGAGTCTTGAGAAAACTCCTTTCGCCGTCGTCTTCCACCGTAGCATTAGGTTCCGTTCTAGCAACATTATCCTGCGACACGAAAAGGAAATGTCTATGGTTGAGGAGCCGCTATATCCAATAGCAGTGCTTATAGATGAGTTGAAAAATGATGACATTCAGCTTCGGTTGAACTCAATTCGAAAGTTGTCTACGATTGCGCGGGCTCTTGGGGAGGAGCGAACGCGTAGGGAACTGATACCCTTTTTGGGTGAGAataatgatgatgatgatgaGGTACTTCTTGCGATGGCGGAAGAGTTGGGGGTGTTCATTCCTTTTGTTGGGGGAGTGGAACATGCCCACATGTTGCTCCCACCTTTGGAGACGCTTTGCACCGTTGAGGAAACTTGTGTGAGAGATAAAGCTGTGGAATCACTTTGTAGGATTGGATCACAGATGAGGGAGAGTGATTTGGTTGAGTATTTCATCCCATTGGTGAAGAGATTGGCAGCAGGTGAATGGTTCACTGCTCGAGTCTCTTCATGTGGACTATTTCATATTGCTTACCCTAGTGCACCAGAAATGTCAAAGACAGAATTGAGATCAATATACAGTATGTTGTGTCAAGATGACATGCCTATGGTTAGAAGATCTGCTGCATCAAATCTTGGGAAGTTTGCTGCAACTGTTGAGTATGCTCATTTGAAGGCAGACACTATGTCAATTTTTGAGGATCTTACTAAGGATGATCAAGACTCTGTTAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGCAAGCTGCTGGAGCCACAAGATTGTGTCACACATATACTACCGGTTATTGTCAACTTTTCACAGGATAAGTCATGGCGTGTGAGATACATGGTTGCAAATCAATTGTATGAGCTTTGTGAAGCTGTAGGCCCTGAACCTACAAGAACGGAATTAGTCCCTGCCTATGTGCGGTTGCTTCGAGATAATGAAGCCGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCTGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTAAAGGAATTGTCTATAGATTCTTCACAACATGTTCGCTCTGCTTTAGCTTCAGTAATAATGGGAATGGCTCCAGTGTTAGGGAAGGATGCCACAATTGAGCAGCTCCTTCCTATTTTCCTCTCCCTTTTGAAGGATGAATTTCCTGATGTGCGGCTTAATATCATAAGCAAGCTTGATCAAGTGAACCAGGTGATTGGAATCGATTTATTATCTCAATCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTTCGGCTTGCAATAATAGAGTATATACCCTTGTTGGCCAGTCAATTGGGGGTTGGTTTTTTCGATGACAAACTTGGTGCCCTTTGCATGCAGTGGTTACAGGACAAGGTTCATTCAATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAAGAATTTGGTCCTGAGTGGGCCATGCAGCATATAATTCCACAGGTTTTGGAGATGAGTAGCAATCCGCACTATTTGTATCGAATGACCATTCTTCATGCCATCTCTCTACTTGCTCCTGTAATGGGCTCTGAAATCACTTGTTCGAGATTGTTGCCTGTTATTATTAATGCATCTAAAGACAGAGTACCCAACATTAAGTTCAATGTGGCAAAGGTCTTGGAGTCAATCTTCCCCATAGTGGATCAATCTGTTGTGGAGACGACCATCCGTCCAAATCTGGTTGAGCTCAGCGAGGATCCCGATGTCGATGTAAGATTTTTTTCCAATCAAGCACTTCAGGCGATTGATCATATCATGATGTCTAGCTAG 1881 0.4381 MRCTLGFEGLSLEKTPFAVVFHRSIRFRSSNIILRHEKEMSMVEEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRRELIPFLGENNDDDDEVLLAMAEELGVFIPFVGGVEHAHMLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVEYFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEMSKTELRSIYSMLCQDDMPMVRRSAASNLGKFAATVEYAHLKADTMSIFEDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVTHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCWILNPDLAIQHILPCVKELSIDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQVLEMSSNPHYLYRMTILHAISLLAPVMGSEITCSRLLPVIINASKDRVPNIKFNVAKVLESIFPIVDQSVVETTIRPNLVELSEDPDVDVRFFSNQALQAIDHIMMSS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 593 626 IPR021133 -
Cca06g00373 626 Pfam HEAT repeat 281 309 IPR000357 GO:0005515
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Cca06g00373 626 Pfam HEAT repeats 400 500 - -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Cca06g00373 626 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 40 626 - -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Cca06g00373 626 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 40 626 - -
Cca06g00373 626 SUPERFAMILY ARM repeat 47 619 IPR016024 -
Cca06g00373 626 Gene3D - 43 622 IPR011989 -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 554 592 IPR021133 -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
Cca06g00373 626 ProSiteProfiles HEAT repeat profile. 49 87 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00373 Cca-Chr6 11306334 11316194 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00373 06 11306334 11316194 Cca06g00373 06 11306334 11316194 ECH