Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00354 ATGGGTAAGAAGCTTGATGCTCTCCTTGGTAGAACCTTCAAGGCTTCAAAGTTCAAGGCAACTGTTAACCTTGCCACCTCACGCATAGCTGTTCTCAAGAACCAGCGCCATGCTCGCCTTAGACATGCACGTTCTGATGTGCTTGAACTCCTCCAACTTGGTCACCAAGAACGAGCCTCACTTAGAGCTGAGCATGTGATAAAGGATCAGAACATGTTGGATGTGTATGACATGATTGAGGGATACTGCAACCTCTTGATTGAAAGGGTCCACCTCATTGAACAAGAAAGAGAATGTCCCGAGGAACTGAAGGAGGCAGCATCTGGATTACTCTATGCAGCTTCTAGGTGTGGAGATTTCCCAGAAATTCAAGAGATTCGCGGTGTTCTGACCACGCGGTTTGGCAAGGAATTTGCTGCTCGTGCTATCGAGTTGAGGAATAACTGTGGAGTTCATCCTCAGATTATACAAAAGATGTCAACAAGGATGCCAAGCTTGGAGATCAGAATGAAGGCACTCAAAGACATTGCTTCTGAGAATGGTATTGTTCTGCAGCTTGAAGAAACTTCTGTGTCGGTTGAGGAACACTTCAATTTGGAAAAGCAAAACCTGCATGAACCTGAGAAAAAGGAAGAGAATGCAAGCATTTTGCCTAGTAGAGGGAAAGATGAGGAGTTAACTGATTCCTTTAAGGGCAGGCAAAAGTACAAGGACGTGGCTGATGCAGCACAAGCAGCTTTTGAGTCAGCAGCATATGCTGCAGCTGCTGCAAGAGCAGCACTGGAACTCTCCCGATCTGAATCACATGATCCTGATGATCATGATAGTCCAAGCCCCCAACCAAGAAAAGTAGAGGATGATGGACATGATAATGTGAGGCCTCCACCGGAAGAAAATGAAATCCTCAGTGAAACAGAAGAAGAATTTGACAAGGATATAGATGACATAAAAAGGCCAAAAGACATTATAAGTTGCAATTCAACCGATGAGATTTTGAAGGGGGCTGAAATTGATGCTGATCCTTTGGAAAAGGAAATAGTTTTTGATGAAACTGATGAAGAGACTGATAATGAACATAAAAGAAATCAATCTTCTAAGACTTCTTCAGAGTATGGTGCTGGAATTGAGGTTGGTTCAGGTTCTAGGAAACTAGTATTAAATACAGTGGCAGGATCCGAGATGCAGAGCGTGCCTCAGTTGGATTTGCAGAAGAGGCCAATTTCAGTGAGGACAAGATGA 1239 0.4383 MGKKLDALLGRTFKASKFKATVNLATSRIAVLKNQRHARLRHARSDVLELLQLGHQERASLRAEHVIKDQNMLDVYDMIEGYCNLLIERVHLIEQERECPEELKEAASGLLYAASRCGDFPEIQEIRGVLTTRFGKEFAARAIELRNNCGVHPQIIQKMSTRMPSLEIRMKALKDIASENGIVLQLEETSVSVEEHFNLEKQNLHEPEKKEENASILPSRGKDEELTDSFKGRQKYKDVADAAQAAFESAAYAAAAARAALELSRSESHDPDDHDSPSPQPRKVEDDGHDNVRPPPEENEILSETEEEFDKDIDDIKRPKDIISCNSTDEILKGAEIDADPLEKEIVFDETDEETDNEHKRNQSSKTSSEYGAGIEVGSGSRKLVLNTVAGSEMQSVPQLDLQKRPISVRTR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00354 412 MobiDBLite consensus disorder prediction 263 300 - -
Cca06g00354 412 MobiDBLite consensus disorder prediction 200 229 - -
Cca06g00354 412 Pfam Regulator of Vps4 activity in the MVB pathway 19 182 IPR005061 GO:0015031
Cca06g00354 412 Gene3D - 6 193 IPR042277 -
Cca06g00354 412 MobiDBLite consensus disorder prediction 263 329 - -
Cca06g00354 412 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 8 412 - -
Cca06g00354 412 MobiDBLite consensus disorder prediction 348 412 - -
Cca06g00354 412 PANTHER IST1 FAMILY MEMBER 8 412 IPR005061 GO:0015031
Cca06g00354 412 MobiDBLite consensus disorder prediction 385 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00354 Cca-Chr6 10598819 10602351 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00354 06 10598819 10602351 Cca06g00354 06 10598819 10602351 ECH