Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00347 ATGAAGGTTTTTGTGAAGACTCTAAAGGGAACGCACTTTGAAATTGAAGTGAACCCCTCAGACACGCTGTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGACGTCTATCCTGCTGTGCAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTATCGAAGGCTAAGAGCTCATCCGGTGAAGGATCCACTGCTTCAACTGCACTTTCAGCTAAGACTACTGCAGCTCTTACTTCAACATCGGTGTCTGCTGCATCTCAAGCTCCTGCTTCAACTGGAGCAACGCCTACACCTGTTACTGCACCAGCAGctgctcctgcacctgcaccagctcctgctcctgcacctgcaccagctcctgctcctgctcctgcaccagctcctgctcctATTTCTTCAGGCTCTTCTGTGCCAGGATTTGATATATATGGACAGGCAGCATCCAATCTTGTTGCTGGAAGCAACTTGGAGGAAACAGTTCAGCAAATCCTTGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTCTACGTGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCCGGCATTCCAGAGGAAGCTGAAGCTCCACCTGCTACTCGAGTGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTTCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAATCCTCTAGATCTCTTCCCCCAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCTCTTTAGACTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTACGTGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTCATGAGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGCGAGGGAAATATACTGGGACAGCTGGCTGGTGCCATGCCTCAAGCAGTGACTGTCACACCTGAGGAGCGGCAAGCAATTGAACGTCTGGAAGCAATGGGTTTCGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAACGAGGAACTTGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAA 1230 0.4309 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAVQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKAKSSSGEGSTASTALSAKTTAALTSTSVSAASQAPASTGATPTPVTAPAAAPAPAPAPAPAPAPAPAPAPAPAPAPISSGSSVPGFDIYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVLRALRAAYNNPERAVEYLYSGIPEEAEAPPATRVPASAQPANPPAAASQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00347 409 MobiDBLite consensus disorder prediction 240 263 - -
Cca06g00347 409 Pfam UBA/TS-N domain 365 400 IPR015940 -
Cca06g00347 409 Pfam UBA/TS-N domain 178 216 IPR015940 -
Cca06g00347 409 MobiDBLite consensus disorder prediction 226 269 - -
Cca06g00347 409 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Cca06g00347 409 Gene3D - 357 404 - -
Cca06g00347 409 MobiDBLite consensus disorder prediction 106 154 - -
Cca06g00347 409 Gene3D - 275 340 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cca06g00347 409 MobiDBLite consensus disorder prediction 106 120 - -
Cca06g00347 409 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Cca06g00347 409 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Cca06g00347 409 MobiDBLite consensus disorder prediction 123 153 - -
Cca06g00347 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 362 403 IPR015940 -
Cca06g00347 409 SMART CBM 282 325 IPR006636 -
Cca06g00347 409 Gene3D - 171 221 - -
Cca06g00347 409 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 408 - -
Cca06g00347 409 SUPERFAMILY XPC-binding domain 281 346 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cca06g00347 409 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 408 - -
Cca06g00347 409 Pfam XPC-binding domain 284 339 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cca06g00347 409 SMART uba_6 365 402 IPR015940 -
Cca06g00347 409 SMART uba_6 178 218 IPR015940 -
Cca06g00347 409 Gene3D - 1 80 - -
Cca06g00347 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 176 219 IPR015940 -
Cca06g00347 409 SUPERFAMILY UBA-like 175 226 IPR009060 GO:0005515
Cca06g00347 409 TIGRFAM rad23: UV excision repair protein Rad23 1 408 IPR004806 GO:0006289
Cca06g00347 409 CDD UBA1_Rad23_plant 172 221 - -
Cca06g00347 409 SUPERFAMILY UBA-like 346 408 IPR009060 GO:0005515
Cca06g00347 409 SMART ubq_7 1 75 IPR000626 GO:0005515
Cca06g00347 409 CDD Ubl_Rad23 1 74 - -
Cca06g00347 409 PRINTS DNA repair protein Rad23 signature 310 332 IPR004806 GO:0006289
Cca06g00347 409 PRINTS DNA repair protein Rad23 signature 359 375 IPR004806 GO:0006289
Cca06g00347 409 PRINTS DNA repair protein Rad23 signature 376 390 IPR004806 GO:0006289
Cca06g00347 409 PRINTS DNA repair protein Rad23 signature 391 406 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00347 Cca-Chr6 10303773 10311810 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00347 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.71e-09 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00347 06 10303773 10311810 Cca06g00347 06 10303773 10311810 ECH