Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00332 ATGAGTAAGGTGGAGAATTATACCTTGACCAATAAAGAACTCTTCATGCCTTTCTCCAACAATGACAACTTTTTGGATCAACAGCCACATCTCCAAACAGATCAAACTTTAACTCATTCGGAGAATTACCCAGATCCTATCCCACAGATTCCTTCATCAACCTCTGTCTACAGCACAAAATATGGTCATTCTTCTCCTCCATCTGCAACTGGTTGTGCTGAAAAGAATAAGGAGTTGATTGGAAACAAAAGGAAGATAAACAATGACAGACTTAAAGAGAAAGGAAATGAAGTTATCCATGTAAGGGCAAAGAGAGGCCAAGCAACTGATAGCCACAGTTTAGCAGAAAGGGTGAGAAGAGAAAAAATCAATGAAAAGATGAGATATTTACAGGAGTTGGTTCCAGGGTGCTATAAGTCAATGGGAATGGCTGTGATGTTAGATGTGATAATAGATTATGTTCAGTCACTACAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCAGCAGCAAGTATGTATTTTGATTTGAGCAGTACTGAGATGGATGCCACTGAAATCATGCAGAGGAGTGCTAGCACACATGAAATACAAGAGATGGATGGGATAGGAGGAGAAGGTTATGGTGGGATCTGCTATTTCAACCCAACGTGGCCACTTTATTGA 666 0.3994 MSKVENYTLTNKELFMPFSNNDNFLDQQPHLQTDQTLTHSENYPDPIPQIPSSTSVYSTKYGHSSPPSATGCAEKNKELIGNKRKINNDRLKEKGNEVIHVRAKRGQATDSHSLAERVRREKINEKMRYLQELVPGCYKSMGMAVMLDVIIDYVQSLQQQIEFLSMKLSAASMYFDLSSTEMDATEIMQRSASTHEIQEMDGIGGEGYGGICYFNPTWPLY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00332 221 MobiDBLite consensus disorder prediction 37 71 - -
Cca06g00332 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 157 IPR011598 GO:0046983
Cca06g00332 221 SMART finulus 113 163 IPR011598 GO:0046983
Cca06g00332 221 PANTHER TRANSCRIPTION FACTOR BHLH75 9 202 - -
Cca06g00332 221 CDD bHLH_AtBPE_like 97 180 - -
Cca06g00332 221 Pfam Helix-loop-helix DNA-binding domain 111 158 IPR011598 GO:0046983
Cca06g00332 221 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 9 202 IPR024097 GO:0006355
Cca06g00332 221 Gene3D - 103 176 IPR036638 GO:0046983
Cca06g00332 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 174 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00332 Cca-Chr6 9384301 9385746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00332 93 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 67.521 3.15e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00332 HLH 2.9e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00332 06 9384301 9385746 Cca06g00332 06 9384301 9385746 ECH
Cca06g00332 06 9384301 9385746 Cca08g00236 08 3272304 3274236 ECH
Cca06g00332 06 9384301 9385746 Cca09g02708 09 52755045 52756869 ECH
Cca06g00332 06 9384301 9385746 Cca07g02357 07 52158938 52162730 ECH