Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00319 ATGGCTTCCCACTCCATTTGGGGCTTCCATTTTCTACTCTCTTGTTTCATGCTTCTTGTCTTGGCTTCTGTTCACCCGGTTTTGGTAGACCCCCAACAATGCCCCCAAGAGCCTGAGCCCTGTGGATTTCTCGGGAACATCTCCTTCCCCTTTACAACTTCTGACAACTCAGATTGTGGCTTCCAAATAAGAGGCTGTGACCTCGAAGATCAAGTTAAGGAAATCCAATTGACAGATCAGGAATGGTATAAAATTGATAGCATATTGAACAGCTACGGGTACAGTTATATTATAATCCATTACCCCGATTTTGACGCTTTGTCCGCTCCATGGACGCTTAAAAAGCCTTTTCAAATCGATAACAATATTACCTTCTCCAAATGCATTTCCAACCCCACTGAGAGCACAATCCATAAGCCTGACATGTCCTTATATAGAAAATGTCCTTACTTCGATATCTACTTCAGTTCTTCCTCTAAAAATGGTGAtcctcttcccatgtcgcccttccccttgcccatgcccagccttcccttCGCATGTTTACTTTTTCAGTTTCTTCCACTTGGACAAGTAACCATTCCCACTTGCCCTTCATGTACATTCCTATTTTCTCTTCTCCAAATTAAACTAGACTTGCCCAAATCTTGTATTCACTGTCATCCACCATATTTTCATCCACCATCACCTGGACCAGAGCCAAAGAGCAAGGAGTCTAAGAAAACAGGTGTTTCTTCTGCAGGTTTATCTATTGGAATACCAAGCGCGGTTGCATTTCTTGCCCTGGTGGTTATTCTTTGGCTGTACAAAGGAAGAAACAGATATAAAGGCCTCAAAAACCAGCCAAGAAGCGCTTATTCTGCTTCCTTAAGAAACACAACGATCCGAGAAAGTGGGGCTCTCTACTTTGGGATCCCTGTCTTCTCCTATGAGGAGCTCCAACAGGCAACCAACAATTTCGATCAAGCTAGGGAACTTGGAGAAGGAGGCTTTGGAACTGTTTACTACGGAAAGCTTCAAGACGGGCGTGAAGTTGCAGTGAAGCGTCTGTTCGAGCGCAACTACAGGCCAGTGGAGTCATTCATCAATGAAATTCAGATCCTCACACGTCTTCGCCACCAGAACCTCGTGACCCTCTATGGCTGCACTTCGCGTCACAGCCGTGAGTTACTCCTAGTATATGAATACATCCCAAATGGCACTGTAAGTTCCCATCTCCATGATGATCAAGCAAAGCCATGCCAATTGACTTGGCCTGTGAGAATGAAAATTGCCATAGAGACTGCAAGTGCATTGGCTTATCTCCATGCTTCAGACATCATTCACCGTGATGTGAAAACCAGCAACATTCTCCTTGACAGTGACTTCAGCGTTAAGGTTGCGGATTTTGGTCTCTCAAGACTGTTCCCTGATGATGTCACACATGTCTCCACAGCTCCAAGGGGAACTCCGGGTTATGTTGACCCGGATTATCGCCTGTGCTACCAGCTTACAACCAAGAGTGATGTGTACAGCTTCGGTGTTGTGCTTGTTGAGTTAATATCATCTCTCAAAGCAGTTGATATTAACAGGAGCAGGGATGATATTAAGCTGGCGAATCTTGCCATAAGGAAGATTCAAAAGGGGGCGTTTTGTGAGTTGGTTGATCCTTCCCTTGGATTTCAGTCAAATGAGAAATTGAAAAGGATGGTAATTTCGGTGGCGGAATTGGCTTTTCGGTGTTTGCAAGGGGACAAGGAATTGAGGCCCTCTATGGTTGAAGTGTTGGAGGTGCTGCAGATGATTCAAAGTGGGAGAGATGAGCCAGGGAATCTTGAGGGAATTGAAGTTCATGGTACTGCTAGAGCTACACAAAGCTATGCTCATCCACCTCTGATGCGGCCACACCAGCGCCTTCACCAAACCCAATGA 1911 0.439 MASHSIWGFHFLLSCFMLLVLASVHPVLVDPQQCPQEPEPCGFLGNISFPFTTSDNSDCGFQIRGCDLEDQVKEIQLTDQEWYKIDSILNSYGYSYIIIHYPDFDALSAPWTLKKPFQIDNNITFSKCISNPTESTIHKPDMSLYRKCPYFDIYFSSSSKNGDPLPMSPFPLPMPSLPFACLLFQFLPLGQVTIPTCPSCTFLFSLLQIKLDLPKSCIHCHPPYFHPPSPGPEPKSKESKKTGVSSAGLSIGIPSAVAFLALVVILWLYKGRNRYKGLKNQPRSAYSASLRNTTIRESGALYFGIPVFSYEELQQATNNFDQARELGEGGFGTVYYGKLQDGREVAVKRLFERNYRPVESFINEIQILTRLRHQNLVTLYGCTSRHSRELLLVYEYIPNGTVSSHLHDDQAKPCQLTWPVRMKIAIETASALAYLHASDIIHRDVKTSNILLDSDFSVKVADFGLSRLFPDDVTHVSTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLVELISSLKAVDINRSRDDIKLANLAIRKIQKGAFCELVDPSLGFQSNEKLKRMVISVAELAFRCLQGDKELRPSMVEVLEVLQMIQSGRDEPGNLEGIEVHGTARATQSYAHPPLMRPHQRLHQTQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00319 636 SUPERFAMILY Protein kinase-like (PK-like) 299 595 IPR011009 -
Cca06g00319 636 Gene3D Phosphorylase Kinase; domain 1 295 396 - -
Cca06g00319 636 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Cca06g00319 636 CDD STKc_IRAK 326 593 - -
Cca06g00319 636 ProSiteProfiles Protein kinase domain profile. 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00319 636 Gene3D Transferase(Phosphotransferase) domain 1 397 601 - -
Cca06g00319 636 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 602 - -
Cca06g00319 636 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 602 IPR044652 -
Cca06g00319 636 Pfam Protein tyrosine and serine/threonine kinase 323 591 IPR001245 GO:0004672|GO:0006468
Cca06g00319 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Cca06g00319 636 SMART serkin_6 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00319 Cca-Chr6 8633731 8636433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00319 205 597 Receptor kinase-like Gene Family AT1G25390 55.062 6.26e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca06g00319 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00319 06 8633731 8636433 Cca06g00319 06 8633731 8636433 ECH