Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00318 ATGGTTCAATACTCTTTCTTGCGTTTCCTTGTTCTCAGTTTCTCTCTGCTTCCTCTCTTGGCTGAAGATGAAAAGAAATACCAAGGGAAGTGCCCAACATCTTTTCAATGCGGTGAGTTTGGGGAACTCCAGTTTCCATTCACCAACACAACAAACCTGGGCTGTGGTTTGCCCATAAAGCGTTGTGATGATGAAAATACATTTAAAGTAGTCCATTCACCAAAAACATTGTATAAACTAGAATCCATCGATGGGAGCAATTCAATCTCTGTCACAGACCACCACCTTCGGAAACTCTTGAACAACAGAAGCTGCAATGCCTTCACTTACGATCTTAAAGAAACCCTTCCTCAGAACTCCTCCATGCTGCATTTTCAGATCGAAATGAAACACAATATAACCTTGTTAAGATGCAGACACGCCCTTGATAATAGCACTAAATACATACATCACATAAGCTGTAACGACTCCGAAATCTACTACCCTTCTCAAAATTTTGGAACGGATAACAATGACATGCTTGAAAATGCATGTTCAACCCTCCAGCTTCCAATTAATTCATCGCTTCCTGTGGACAATTCCACAGACTTGTACACTTCCGTACATGCTGGATTCCGACTGCTGATATCGGTATCAGAGAATTGTCGCGAGTGTCAAGAAAATGAAGCTCAATGTCAAGTTCACAACTTTCGTTGTACCGGTACCAAAGGAGCAGCAGAACCCTCCAAGCGTAAACAAGCAGTTGACATTATTCTAAAATCAGGTTTAGTAGCTGTTGGTTTTGTAAGCGTGATCATATTAAGTTTGATAATTCTGCTTTTCCATAAACGGAGAAACAGACCTTCGGACGACCAAAGCCAATCAAGAAAAAATCATTGTAGTCCTACTCCTAACTCAAATTCAATCCCAGAGAGTGGCAGTAAGTTGTTTGGAATCCCTGTCTTCTCCTATACAGAGCTAGAGAAAGCAACAACAAATTTTGATGAAGCTAAAGAACTTGGAAGTGGAGGCTTTGGGACTGTTTACTACGGAAAGCTCAATGATGGACGAGAAGTAGCTGTGAAGCGCCTATACGAGCACCACTACAGACGGATGGAACAGTTTATGAATGAAATAGAGATCCTGACACGTCTGCGACACAAAAATCTCGTGTCCCTTTATGGCTGCAGTTCACGGCAACACCGTGGACTACTGCTTGTGTATGAATATGTACCAAACGGCACTGTTGCATCTCATCTGCATGGTGATTCAGCCAAGGCTAGCTTCTTGCCGTGGCACATTCGAATGAGAATTGCCATAGAAACTGCGAGTGCATTGACTTATCTGCATGCTAGTAGCATCATTCACCGCGATGTGAAAACCAACAACATTTTACTTGACAACAATTTTTGTGTTAAGGTTGCAGATTTCGGGCTTTCGAGACTGTTCCCCAACAATGTGACACATGTTTCCACGGCTCCACAAGGAACACCGGGGTATGTTGACCCTGCATATCACCAATGCTACCAGCTAACGAACAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTTGTTGAGTTGATATCATCTCTCAAAGCAGTTGATATAACAAGGAGTAGGGATGAGATCAACTTGTCAAATTTGGCCATAAAGAAGATAAAAAATGGTGCATTTAGTGAACTGGTGGATCCTTCCCTTGGCTTTGAATTGGATAAAGAAATTAAGAGGAAGACATTTTCAGTGGCGGCATTGGCTTTTCAATGTTTGCAAGAGGACAAGGATTTGAGACCTTCCATGGTGGAAGTTTTGGAGTCACTCAAGAAAATTGAAGGTGGGGGAGGATGA 1824 0.4227 MVQYSFLRFLVLSFSLLPLLAEDEKKYQGKCPTSFQCGEFGELQFPFTNTTNLGCGLPIKRCDDENTFKVVHSPKTLYKLESIDGSNSISVTDHHLRKLLNNRSCNAFTYDLKETLPQNSSMLHFQIEMKHNITLLRCRHALDNSTKYIHHISCNDSEIYYPSQNFGTDNNDMLENACSTLQLPINSSLPVDNSTDLYTSVHAGFRLLISVSENCRECQENEAQCQVHNFRCTGTKGAAEPSKRKQAVDIILKSGLVAVGFVSVIILSLIILLFHKRRNRPSDDQSQSRKNHCSPTPNSNSIPESGSKLFGIPVFSYTELEKATTNFDEAKELGSGGFGTVYYGKLNDGREVAVKRLYEHHYRRMEQFMNEIEILTRLRHKNLVSLYGCSSRQHRGLLLVYEYVPNGTVASHLHGDSAKASFLPWHIRMRIAIETASALTYLHASSIIHRDVKTNNILLDNNFCVKVADFGLSRLFPNNVTHVSTAPQGTPGYVDPAYHQCYQLTNKSDVYSFGVVLVELISSLKAVDITRSRDEINLSNLAIKKIKNGAFSELVDPSLGFELDKEIKRKTFSVAALAFQCLQEDKDLRPSMVEVLESLKKIEGGGG 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00318 607 MobiDBLite consensus disorder prediction 288 305 - -
Cca06g00318 607 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 604 - -
Cca06g00318 607 Gene3D Transferase(Phosphotransferase) domain 1 404 603 - -
Cca06g00318 607 ProSiteProfiles Protein kinase domain profile. 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00318 607 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Cca06g00318 607 Gene3D Phosphorylase Kinase; domain 1 300 403 - -
Cca06g00318 607 SMART serkin_6 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00318 607 SUPERFAMILY Protein kinase-like (PK-like) 301 599 IPR011009 -
Cca06g00318 607 MobiDBLite consensus disorder prediction 280 305 - -
Cca06g00318 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Cca06g00318 607 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 604 IPR044652 -
Cca06g00318 607 Pfam Protein kinase domain 328 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00318 Cca-Chr6 8629357 8633025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00318 35 603 Receptor kinase-like Gene Family AT1G25390 47.993 5.32e-161 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca06g00318 Pkinase 1.2e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00318 06 8629357 8633025 Cca06g00318 06 8629357 8633025 ECH