Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00308 ATGAACCCAATACCTCTCAATCTCATACTCCTCTTCCTCTATTTCACCCCCGCGCTCTCGCTGGACCCAAAATTCGAGGCCTGCGAGCCCAAAACATGCGGCGCAGGCCCAAACATAAGCTACCCCTTCTACATCCGAGGGAGACAAAACCCCTTCTGCGGGAACCCAGGGTTCGAAGTCACGTGCGGCCACAATGGGCTCCCGATTCTGAATCTGATAAACAGCAACTACACGGTGGAGAGAATCTTCTACAGAAACCACACGCTGCGAGTGACGAACCCGGCGTTTTCGCGGGGGAACGGGTCGTCGGCGTGCTTGGGTCACGCGCAGAACGTGACGGTGGGGAGGTACAGGTTCCGCGTGGCGCCGGGGCAGAGGGAGGTGTGGGTGGCGTACGGGTGCCAGGGGGTGGGGGCGCGGAGGATCGGGTGCGACGCGGGGAACGGAACGGCGTCGGTTTGgggggtggaggtggaggcggaggtggcgagggggaagtgctcgggcggcgtggtggcggcgacggtggaggatgtgagaggcggcgtggcggaggcgCTGAGGAGAGGGTTTTTGTTGATTTGGAATGCGACTAACTGCACGGAGTGCATGAACAGCGGAGGGAGGTGCGGCTTTGACCCTGACCCCGACACATATGCTTTTCGCTGTTACTGTCCTGATAGGCCTCATGCAGTCAAATGTGCTGCAGGGACAAAAGGGTTGAGTAATGCAGGAAAAGTAGGCATAGGTTCAAGTGTTGGACTACTATGCATCGTGGTGATTGGTTGGCTCCTACATTACAAAAGAAAACACAGTTCCTCAGGTGATGAACTCCAAACAAGAAGTACTTATTCTGATCCCTCTCCGGATCCAGATGTCGAAGGTGGCAGTGCATACTGTGGAGTTCATCTCTTCTCCTACAAGGAGCTTGAAGAAGCAACAAACCGTTTCGACCTTAATAAGCAAATTGGAGATGGAGGCTTTGGTACCGTCTACTTTGGGAAACTGAAAGATGGAAGGGAAGTTGCTGTGAAGCACTTATATGATCATAACTACAGGCGAGTAGAACAGTTCATGAATGAAGTTCAGATCCTCACACGTTTACGCCACAGAAATCTTGTGTCACTCTATGGCTGCACTTCACGTCAGAGCCGTGAGCTACTTCTTGTGTATGAATACATTCCAAATGGCACAGTTGCCAGCCATCTCCATGGTGAACTGGCAAAGCCTGGCTTGCTAACATGGCCTATACGAATCAAAATCGCCGTAGAGACTGCTAGTGCATTGGCCTATCTTCATGCTTCTAAAATCATTCACCGTGATGTCAAGACTAACAACATTCTTCTTGACAACAGTTTCTGTGTTAAAGTTGCGGATTTTGGCCTTTCAAGACTGTTTCCAAATGACATCACACATGTCTCCACAGCACCACAAGGGACCCCGGGTTATGTTGATCCGGAATATCACCAATGCTACCACCTCACTAGCAAGAGTGATGTGTATAGCTTTGGAGTTGTGCTCATTGAGCTAATATCATCCATGCCAGCTGTTGATATGAACAGGCATAAGGATGAAATCAACTTGTCAAATCTAGCCATAAAGAAGATCAAAAAGGGTGCATTGAGTGAACTGGTTGACCCTTATCTGGGTTTTGAATCAGACAATGAGGTCAAGAGGATGATAGTTGAGGTTGCAGAATTGGCTTTTCAGTGTTTGCAATTGGACAGGGAATTTAGACCTTCCATGGAGGAAGTCCTTGAGGTGTTGAAGAGAATTGAAAGAGGGAAGGATGAGACAAAGCATCTGGAAGAAGCAGATGTTCATAGCTCTGAGGTTTCACATAGTAATGCAAAAGAATTGGATGAAGCTGGATTATTGAAGAATAGGAAGCCACCTTCTTCACCAATATCTGTTACTGAAAGTTGGGAAAGTAAATCTACCACGCCTAATGTAAGTTCTTAA 1962 0.4577 MNPIPLNLILLFLYFTPALSLDPKFEACEPKTCGAGPNISYPFYIRGRQNPFCGNPGFEVTCGHNGLPILNLINSNYTVERIFYRNHTLRVTNPAFSRGNGSSACLGHAQNVTVGRYRFRVAPGQREVWVAYGCQGVGARRIGCDAGNGTASVWGVEVEAEVARGKCSGGVVAATVEDVRGGVAEALRRGFLLIWNATNCTECMNSGGRCGFDPDPDTYAFRCYCPDRPHAVKCAAGTKGLSNAGKVGIGSSVGLLCIVVIGWLLHYKRKHSSSGDELQTRSTYSDPSPDPDVEGGSAYCGVHLFSYKELEEATNRFDLNKQIGDGGFGTVYFGKLKDGREVAVKHLYDHNYRRVEQFMNEVQILTRLRHRNLVSLYGCTSRQSRELLLVYEYIPNGTVASHLHGELAKPGLLTWPIRIKIAVETASALAYLHASKIIHRDVKTNNILLDNSFCVKVADFGLSRLFPNDITHVSTAPQGTPGYVDPEYHQCYHLTSKSDVYSFGVVLIELISSMPAVDMNRHKDEINLSNLAIKKIKKGALSELVDPYLGFESDNEVKRMIVEVAELAFQCLQLDREFRPSMEEVLEVLKRIERGKDETKHLEEADVHSSEVSHSNAKELDEAGLLKNRKPPSSPISVTESWESKSTTPNVSS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00308 653 MobiDBLite consensus disorder prediction 632 653 - -
Cca06g00308 653 SMART serkin_6 317 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00308 653 Gene3D Transferase(Phosphotransferase) domain 1 394 607 - -
Cca06g00308 653 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 16 652 - -
Cca06g00308 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Cca06g00308 653 ProSiteProfiles Protein kinase domain profile. 317 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00308 653 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Cca06g00308 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 652 IPR044652 -
Cca06g00308 653 MobiDBLite consensus disorder prediction 601 626 - -
Cca06g00308 653 Pfam Protein kinase domain 319 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00308 653 SUPERFAMILY Protein kinase-like (PK-like) 299 593 IPR011009 -
Cca06g00308 653 MobiDBLite consensus disorder prediction 601 653 - -
Cca06g00308 653 Pfam Wall-associated receptor kinase C-terminal 177 227 IPR032872 -
Cca06g00308 653 Pfam Wall-associated receptor kinase galacturonan-binding 28 92 IPR025287 GO:0030247
Cca06g00308 653 Gene3D Phosphorylase Kinase; domain 1 293 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00308 Cca-Chr6 8358621 8370008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00308 24 653 Receptor kinase-like Gene Family AT1G25390 46.322 1.81e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca06g00308 Pkinase 2.8e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00308 06 8358621 8370008 Cca06g00308 06 8358621 8370008 ECH