Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00306 ATGGTTACTAAGAAGGAAAGGACGGAAGAAGTAAGAAAGGTGTCGCAAAGGTCAGGTGAGGTCGCACATTGGATTAACTACCTACATATCAAAGCCGGATCTTCACTTCCGCACCCTAAGGCCTCTCTTTTTCTTCACTCTTCCTCACACCCAACGCCACCTTCCATGGAGGCGCAACCCACTCCTCCGCCGCCACATCAGCCGAACTACCCCGACTCGGTGGACTCCTCCCCGCGGTCCTCCTGGGACGAGCCCTCCCCTTCTCCGGGCAGCGGCAAGCTCCGGCTGATGTGCAGCTACGGCGGGCACATCGTCCCCCGCCCCCACGACAGGTCCCTCTGCTACGTGGGCGGCGACACCCGCATCGTGGTGGTCCCCCGGCACACCTCCCTCGCGGAGCTCTCCACGCGCCTCTCCAAGTCCTTGAACCACGCGCGCCCCTTCGCCCTCAAGTACCAGCTCCCCAGCGAGGACCTCGACTCCCTCGTCTCCCTCACCACCGACGAGGACCTCGACAACATGATCGACGAGTTCGAGAACTCCCCTCTCAAGCCTTCGCGAATTCgcctcttcctcttcccggcccagccccacctccccttgggcctgggcctgggcctcggcctcggcctggcctccgccAAGTCCGAGGAGTGGCTCAGCGGCTCCCTCGACGGGGGCCTGTCGGAGTCCGCTTCCGTCAACTGCCTCCTCGGACTCGACGACGAGGCCGCTGCCGCGAACAACAGCGGGAAACTTCCGAAGGAGGCGACCGTGACGGTGACGGTGACGGAGACTAATTCTTCCTTCGGCTCTGCTTCCTCCGTGGCGAATTTGCCCCCGATTAAGGTCCGCGTGGAGGACGGCGTTAAGGTTCCGCAGGATCAGAGGGTTGCGGGCGTTGAGGAACAGTTTGCGCAGTTGGGTGTGGGACAGAAGCAAGAAGAGGGGTTTGTTGCGGTTGTCTCCGATGACGACAGATCCGATCATGGGGTCCCTCTGGGCTTTAGAAAACCGCCAACCCCACTGCCTCAGCCTCAGCCTCAGCCTCCTCAATTTCAACAGAAATCGGCTGGTGCTGTTGATTTTCCTTCGCCGGAATCACTTTCAAGTGATAGTAGTCTTTCAAATGCAATGTCACGCACAAATCCAGCCATCTATCAAGACCAGGCTCAAATTCAATCTGGAAATTCTCAGGTTCTTAATAATACCATGGTTGATCCGAAGCTTAATGCGACTGATCCACAAGGTCGGATTCAGATGCAGCAGCATGTACAGGAACATGGATATGTTTTGCAGCCGCAATTTGATCAACAGCCACCACAACTGCAGCAGTCTCAACAGCCGCAGCAGTATATGCACGGCACACATTTAATTCACCATACCCCGGCAGGGCCTGTGTCAATCCCTGCTTCATACTATCCTGTATATCAGCAACAGCTCCATCACCTTGATCAGCAATACCCAGTTTACTATGTGCAGCCAAGGCAGGCCCAAGCATACAACTTGTCAGTGCAGCCGTCTAATGTAGCTGAATCTGCCACAACTGTCGCTTCTAGCCAATCCCAAAATCTGCCAAATTCTGCTGCTTACAACCCAATGAGGAATGTTCCCTTGCCTAGCTCCGAAGTGACTGCAGGCGCATACAGAAGGACACCTGCCACTCCTCAATTAGTTCAAGTTCCTCATACTAAGCATCATCAGCAATATGTTGCTTACTCACAAATTCATCATCCTCAATCGGTTCCCCCTAATTCTGCAGTACCTGCTACTTATGCTTATGACTATGCGGATCCTGCTTATGCTCAAGTATTTTATACTCAACCTATGGCACCCTCCATGCCTTCACAGTACCAGACCATGACAGCTGCTGCTGCAGTGTTGCCGGAAGGTTCTACTCAGCTTCCCTCGGATGGCTTGAAGCAGCAGGTGAGAACCTCACAGCCATTGTGA 1953 0.5238 MVTKKERTEEVRKVSQRSGEVAHWINYLHIKAGSSLPHPKASLFLHSSSHPTPPSMEAQPTPPPPHQPNYPDSVDSSPRSSWDEPSPSPGSGKLRLMCSYGGHIVPRPHDRSLCYVGGDTRIVVVPRHTSLAELSTRLSKSLNHARPFALKYQLPSEDLDSLVSLTTDEDLDNMIDEFENSPLKPSRIRLFLFPAQPHLPLGLGLGLGLGLASAKSEEWLSGSLDGGLSESASVNCLLGLDDEAAAANNSGKLPKEATVTVTVTETNSSFGSASSVANLPPIKVRVEDGVKVPQDQRVAGVEEQFAQLGVGQKQEEGFVAVVSDDDRSDHGVPLGFRKPPTPLPQPQPQPPQFQQKSAGAVDFPSPESLSSDSSLSNAMSRTNPAIYQDQAQIQSGNSQVLNNTMVDPKLNATDPQGRIQMQQHVQEHGYVLQPQFDQQPPQLQQSQQPQQYMHGTHLIHHTPAGPVSIPASYYPVYQQQLHHLDQQYPVYYVQPRQAQAYNLSVQPSNVAESATTVASSQSQNLPNSAAYNPMRNVPLPSSEVTAGAYRRTPATPQLVQVPHTKHHQQYVAYSQIHHPQSVPPNSAVPATYAYDYADPAYAQVFYTQPMAPSMPSQYQTMTAAAAVLPEGSTQLPSDGLKQQVRTSQPL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00306 650 PANTHER EXPRESSED PROTEIN 56 641 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 55 71 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 352 379 - -
Cca06g00306 650 Gene3D - 112 194 - -
Cca06g00306 650 CDD PB1_UP2 97 193 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 72 87 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 325 379 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 635 650 - -
Cca06g00306 650 SMART PB1_new 108 193 IPR000270 GO:0005515
Cca06g00306 650 SUPERFAMILY CAD & PB1 domains 109 198 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 38 94 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 337 351 - -
Cca06g00306 650 MobiDBLite consensus disorder prediction 631 650 - -
Cca06g00306 650 Pfam PB1 domain 111 194 IPR000270 GO:0005515
Cca06g00306 650 ProSiteProfiles PB1 domain profile. 93 195 IPR000270 GO:0005515
Cca06g00306 650 PANTHER OS05G0427100 PROTEIN-RELATED 56 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00306 Cca-Chr6 8250594 8253536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00306 94 195 MAP Kinase Kinase Kinase AT1G04700 47.115 1.11e-23 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00306 06 8250594 8253536 Cca06g00306 06 8250594 8253536 ECH
Cca06g00306 06 8250594 8253536 Cca08g00267 08 3751486 3754509 ECH