Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00248 ATGTTGGGTTATACACTCTTAACGCCCTCCAACCTCAACCCTTCGCACTTCCTCCCACCCATCACCGTCGCACAGACTCTCCCACCAAGCACCCTCGCTATCTCTTCCAAATCCAAATCCAAACTCGCCTTCTCCGCCAGGGCCACTGGTAACGGCCGTGACGCCACCTTCCCCCCTGGCATTGATGCAGCAACAAGTACATCTTCTGACCTGGGTGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCTTAGATCGGGATCCTTTGGATAGAGAACAAGCTATAATGGCTCTCTGGAAATATTCGCTTGGTGGGAAGAAGTGTGTAGACACTTTAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAATCTCCTCAGATCAGAGTCTAGTTCAGCATGTGAGGCAGCTGCAGGCCTTCTACGATCACTATCTTCAGTCAATCTATATAGAAATTCTGTAGCTGATAGTGGAGCAATAGAAGAGATGAACAGATTGATGAGGCAATCTTCCTTGGCTCCTGAGGTAAAGGAGCAGAGTTTGAGTACACTGTGGAATTTATCTGTTGATGAGAAGCTCTGCATTAAAATTTCAAATACTGATATTCTGCCGTTAGCTATTAAGTACCTTGACGACGAGGATATAAAAGTGAAGGAGGCTGCAGGGGGCATATTGGCAAATTTAGCATTGAGCCGTGTTAACCACAACATCATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAACATCTAACTTGGAAGGATCCAAAGTTATTAGGAAGGAAGCAAGGAATGCATTGCTGGAACTTGTTAAGGACAACTATTTTAGAATTCTTGTTATTGAGGAAGGTCTGGTTCCTGTGCCATTAGTTGGTGCTGCAGCCTTTAAGTCATTCACCCCAGGCTTACATATGTGGCCCACATTACCTGATGGTACAGAAATTGAAAGGACTTCTAGACAGCCATCCAGATATGGTGCTTCGGAATTACTTGTTGGACTAAATATTGACGACAAGAATGCTAACTTAGATGAAGCAAAAGTCAACGCAATTGTTGGACGAACACAACAGCAATTCCTTGCCCGTGTTGGGGCTTTAGAAATGGAAGAAAAGACTATGCCTCATTCTGAATGCTCAAATGATCAGAGGTTTACACTTTTACCGTGGATGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTGGACGATAAGTCTGCAATTATAAAGGCTGCTGAGTCAATTGCTATTGCGTGTATCAATGAACATCTACGTATTGCATTCAGGGAGGCTGGAGCAATTAAGCATTTAGTAAGGCTTTTGAGTTGTGAGGATGATGCAGTCCAGTTGGCGGCAACACAAGCTTTGGAAAGGCTGTCTGTTAGCAACATTGTTTGCCGGGTAATTGAAGCTGAGGGGGTTTTAGGTCCTTTAGTTAGTATTTTGAAAAGCTCAGGGATAGCTGGAACCATTGTGGAAAAGTCTTTGAACATACTTGCTCGGATACTAGACCCCAGTAAAGAAATGCAATTGAAGTTTTATGATGGACCAGCTGATGGATCTGAAAAGGCATTTGGTGGAGTAAAAAGTGATAGGTTTTCAACCGGGGATAGTAGCACCAAACAAGTGGTATTAAAATCATACACAAGGAATGATATACTGGATTCTGTTTTCATTGCACACCTTGTTGAGATTCTGAAGTCCTCTCCTCCCAGTTTACAAGAAAAAGCTGCATCTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTGGCCCTAAGTACACTTTCCGATATTGAATCTGGTCTCAATTCTGTTTTTCAGCAAAAAATTTTGAAAATTTCAGCGGACATGGAATCTGACGTGGAAGATCAGTTTTCTGAAGCATATGCAATTGAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTTACTGACAAGGCTACTCGACTATGAGCAGTTCCGCCACAAAATAAATTTCTCGCATTTCATTGATTTGCTTCGTGGAATCCTCAGGTCCAGCATTCCCCTCCACAACAAAGATTGGGTAGCTGCTTGTCTAGTTAAACTAAGTTCTTTCTCTGGCTCCATCACAAGTCTCTATCCCATCAATATGGAAGTTACTCTTTATGAGACAATTCCAAGACTTCTAGAACAGATCAAAACTTCATTTTCCCCAGAGACACAGGAAACTGCTGTTGTAGAACTTAACAGAATAATATCCGAAGGAGTGGTAGATTCCACAGAAGCAATTGTTTCTGATGAGGCAGTATATTCATTAGTGAATCTGATTGAAGAAGGTAGTGATAGGGCTGTTGAAGCAAGCTTGGCAATACTGTATAATCTGAGTATGGACCCAGAGAACCATTCAGCACTTGTGGCTGCTGGAGCAGTGCAGGTCTTGAAAAGAATTGTTCTATCAAACAGACCACACTGGGAACGGGCACTTCTTTTACTCAGGATTTTGCAACCATGA 2493 0.4264 MLGYTLLTPSNLNPSHFLPPITVAQTLPPSTLAISSKSKSKLAFSARATGNGRDATFPPGIDAATSTSSDLGDGYVALFVRMLGLDRDPLDREQAIMALWKYSLGGKKCVDTLMQFPGCINLVVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVADSGAIEEMNRLMRQSSLAPEVKEQSLSTLWNLSVDEKLCIKISNTDILPLAIKYLDDEDIKVKEAAGGILANLALSRVNHNIMVEAGVIPKLAKFLTSNLEGSKVIRKEARNALLELVKDNYFRILVIEEGLVPVPLVGAAAFKSFTPGLHMWPTLPDGTEIERTSRQPSRYGASELLVGLNIDDKNANLDEAKVNAIVGRTQQQFLARVGALEMEEKTMPHSECSNDQRFTLLPWMDGVARLVLILELDDKSAIIKAAESIAIACINEHLRIAFREAGAIKHLVRLLSCEDDAVQLAATQALERLSVSNIVCRVIEAEGVLGPLVSILKSSGIAGTIVEKSLNILARILDPSKEMQLKFYDGPADGSEKAFGGVKSDRFSTGDSSTKQVVLKSYTRNDILDSVFIAHLVEILKSSPPSLQEKAASVLEFVALTDPTLALSTLSDIESGLNSVFQQKILKISADMESDVEDQFSEAYAIEFEEAGLAISAASRLLTRLLDYEQFRHKINFSHFIDLLRGILRSSIPLHNKDWVAACLVKLSSFSGSITSLYPINMEVTLYETIPRLLEQIKTSFSPETQETAVVELNRIISEGVVDSTEAIVSDEAVYSLVNLIEEGSDRAVEASLAILYNLSMDPENHSALVAAGAVQVLKRIVLSNRPHWERALLLLRILQP 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00248 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 761 803 IPR000225 GO:0005515
Cca06g00248 830 SMART arm_5 148 190 IPR000225 GO:0005515
Cca06g00248 830 SMART arm_5 424 464 IPR000225 GO:0005515
Cca06g00248 830 SMART arm_5 549 589 IPR000225 GO:0005515
Cca06g00248 830 SMART arm_5 232 275 IPR000225 GO:0005515
Cca06g00248 830 SMART arm_5 191 231 IPR000225 GO:0005515
Cca06g00248 830 SMART arm_5 750 790 IPR000225 GO:0005515
Cca06g00248 830 SMART arm_5 106 147 IPR000225 GO:0005515
Cca06g00248 830 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 32 829 - -
Cca06g00248 830 Pfam Armadillo/beta-catenin-like repeat 424 463 IPR000225 GO:0005515
Cca06g00248 830 Gene3D - 381 601 IPR011989 -
Cca06g00248 830 Gene3D - 638 828 IPR011989 -
Cca06g00248 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 466 IPR000225 GO:0005515
Cca06g00248 830 Gene3D - 72 301 IPR011989 -
Cca06g00248 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 160 IPR000225 GO:0005515
Cca06g00248 830 SUPERFAMILY ARM repeat 73 502 IPR016024 -
Cca06g00248 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 192 IPR000225 GO:0005515
Cca06g00248 830 SUPERFAMILY ARM repeat 388 810 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00248 74 304 U-box Gene Family AT2G23140 29.915 1.46e-08 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00248 06 6314017 6320257 Cca06g00248 06 6314017 6320257 ECH