Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00245 ATGGGCACTCTCGAGTCATGGAGAAGAGCCTACGGCGCTCTCAAAGACTCCACCAAAGTCGGTCTCGCTCATGTCAACAGCGATTACGCGGACTTGGACGTTGCCGTAGTCAAAGCCACCAACCACGTCGAGTGTCCTCCCAAAGAGAGACACCTTAGAAAAATTTTGTTGGGAACTTCTGCGTCGCGGCCTCGAGCCGATGTTGCTTACTGCATTCATGCGCTCGCACGTCGATTGGCCAAGACGCGAAACTGGACGGTGGCATTGAAAACATTGATAGTCATTCATCGGTTGTTGAGGGAGGGTGATCCTACTCATAGAGAAGAATTTGTTAATTTCTCACAGAGAGGGCGCATCCTCCACCTTTCTAATTTCAAAGATGATTCCAGCCCAATTGCTTGGGATTGTTCTGCTTGGTTACGTACATATGCCTTATATTTGGAAGAAAGACTTGAATGTTTCTGGATTCTGAAGTATGATATTGAAGCTGAGCGTCTACCTAAGCCTGTTGCCGGGCAGGACAAGGGGTACAGCAGGACCAGGGATTTGAATAGTGAGGAGCTATTGGAGCAATTGCCTGCTTTGCAGCAGCTACTTTATCGACTTGTTGGTTGTCGTCCAGAAGGAGCATCCAATAGTAACTATTTGATACAATATGCTCTGGCTCTGGTTCTGAAAGAGAGCTTTAAAATTTATTGTGCTATTAATGACGGCATTATCAATCTTGTTGATAAGTTTTTTGAGATGCCAAGACATGAAGCTATCAAAGCCATTGATGTCTATAAACGTGCGGGTCAGCAGGCAGCAAGTCTCTCTGATTTCTATGAAATATGCAAAGGGTTGGAACTTGCTAGGAATTTTCATTTTCCTGTTTTAAGAGAGCCCCCACAATCATTTCTTGAAACCATGGAAGACTACGTAAAGGAGGCACCGAGTGTGGTTACAATTCCAAGTGAGGCATTGTTACAATTGACTTACAGACAAGAAGATGTTCCTACAATTGAAGATAAGAAATTATCTGAAGGGGAGCCATCAGTGCCTGTTGATGATGTTGTCTCAAATTCCGAGCCTGCTTCTCCTCCTCCACTGTCTGACAACAATTTTGAAACTGGAGATTTACTGGGATTGAATGACAGTACACCTGATGTATCCTTGATAGAAGAAAGAAATGCCCTTGCTCTAGCCATAGTCCCCAATGAAACTGATTCAAGTGCTTCCCAGGCCAAAGATTTTGATCCAACTGGATGGGAGCTTGCCTTGGTCTCCATTCCAAGTACCAATATTTCTTCAGTCAACGAGAGACAATTGGCTGGTGGATTGGATTCCCTCACCCTTAACAGCTTATATGATGAAGGAACATACAGATCTGCACAGCAAGCGGTATATGCCAAAAATCCATTTGAAGTGCAAGACCCTTTTGCTTTATCAAGTAACATTCCTCCTCAGCAGCAAGTAAATCCCTTTGGTCCATATCAGCCACTGCAGCAACATATGGTGATGAACCCAGCAAATCCCTTTGGGGATGCAGGATACGGGGCATTTCCTGTTTCTCACCCACATAATAACAATCCATTTGGAAGCACTGGCTTCATATAG 1596 0.4442 MGTLESWRRAYGALKDSTKVGLAHVNSDYADLDVAVVKATNHVECPPKERHLRKILLGTSASRPRADVAYCIHALARRLAKTRNWTVALKTLIVIHRLLREGDPTHREEFVNFSQRGRILHLSNFKDDSSPIAWDCSAWLRTYALYLEERLECFWILKYDIEAERLPKPVAGQDKGYSRTRDLNSEELLEQLPALQQLLYRLVGCRPEGASNSNYLIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKAIDVYKRAGQQAASLSDFYEICKGLELARNFHFPVLREPPQSFLETMEDYVKEAPSVVTIPSEALLQLTYRQEDVPTIEDKKLSEGEPSVPVDDVVSNSEPASPPPLSDNNFETGDLLGLNDSTPDVSLIEERNALALAIVPNETDSSASQAKDFDPTGWELALVSIPSTNISSVNERQLAGGLDSLTLNSLYDEGTYRSAQQAVYAKNPFEVQDPFALSSNIPPQQQVNPFGPYQPLQQHMVMNPANPFGDAGYGAFPVSHPHNNNPFGSTGFI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00245 531 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 516 IPR045192 GO:0048268|GO:0072583
Cca06g00245 531 SMART enth_2 30 161 IPR013809 -
Cca06g00245 531 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Cca06g00245 531 MobiDBLite consensus disorder prediction 357 372 - -
Cca06g00245 531 Gene3D ANTH domain 173 327 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cca06g00245 531 Pfam ANTH domain 31 308 IPR011417 GO:0005543
Cca06g00245 531 Gene3D - 7 161 IPR008942 -
Cca06g00245 531 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Cca06g00245 531 CDD ANTH_N 32 154 - -
Cca06g00245 531 MobiDBLite consensus disorder prediction 333 372 - -
Cca06g00245 531 PANTHER OS05G0549000 PROTEIN 1 516 - -
Cca06g00245 531 SUPERFAMILY GAT-like domain 178 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00245 Cca-Chr6 6262828 6295118 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00245 06 6262828 6295118 Cca06g00245 06 6262828 6295118 ECH