Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00243 ATGGCTACCAACAAGTTTGCAACCATGTTGCATAGAAACACCAACAAAATCACCCTGGTTCTTGTCTATGCCATGCTTGAATGGATTCTGATCATCCTCCTTCTTCTGAATTCCCTTTTTTCTTATGTGATCATAAAGTTTGTGGATTATTTTGGGCTTAAAAGACCTTGCATATGGTGCACAAGGATTGATCACATCATAGAGCCGGAAAATAACAAGTGCTCTTGCAGGGATCTTGTGTGCGAAGCTCATGCTTTTGAGATTTCCAAACTGGGTTTTTGCCTGAATCATAGAAAATTGGCTGAATCCGAAACTATGTGTGTGGGTTGTTCGTCTTCATGTCACCCAAATTTTGTGAACTTGTCTCAGACATGGATGCCGCAAATGGGTATGATTCATGATGCTGATGATGATAATAACAAGGTACTTGAGAATGGGGTGGAGCCTTTGAGGTGTTCTTGCTGTGGTGTCAACTATGTGAGCAAGTTCTACCTGATCAGAGATAAGCCTTCTTTGAGGGTTTTGGATTGTACCCAGAAACAGAATTTGATTACTGAAAGTGGGGTTGAGTCAGAGATTGACGAGGGGCATCATCACTCAGATCATGGCGGAGATGATTTTATTCTTGATCATCTTGAAGAGGAAAGGAACACTGTCGAAAACAAGGGAAGTGACATTATTGTTTTTGATGATGATGAGGGTTCAGGTGGAGGAGGAAAGGGGGCAAATGATGTTAATATTTGTTCTGTGTGTGATGGTGCAAAAGAAACTGTGTGTGGTGAAAAATACACATTCTATTTGGGCATAGGGAAAGGGCAAGAAGAAACAATTAGAGAGGAAAGTCTTAGTGTTCCTAAGGATGTTCGATCTTGTGAAGTGATCACTCATCAAGTTGCTTGCACTAGTGAGAACACTGAGCAAATTCCACCCAAACATTTGGATTTTGTCATTCATGGTAATGATTTCTTTTTGATTCCTGTTGAATTTGGAGACTCCTTTGCCACAGAACGTGAAAATCAACATATGTATATGGTGGGGGATGATGGGCTTAGTGGTGATGAAGATGTTATTTTGGATTTTGATATGAATTCTGGGGTAGAACCTGAACCTGTAATTGAGAATTGGCACACTTTTGAGGATACTGTGTCAGTGTCTTCAGGTCCAGGGTGTATAAAGGCATTCGAGGCCTATGGGGCTGAGTCAATTCCATTAAGGATTAGAGGGAAGAGCTTAGAATTAATTGTAGAAAAAGAAAGTTTGGAGCAAAAGTATCAAGAAGTGAAATTTGCTCAAACAACTGTTGACACAGGTATCAATGGCAATGTTGAAACAAACATGAAAAGATATGGGGAGTTATGTTCAGCTGTATCTCAAGTTGCAACACAAATGCAGGGTGATGAATTAGAAGCAGAAGTCTCAACTCAATATCAAGATATTCTCGAGGATTCAAGTCAACAAATACAAGTCCCATCTTCTATCACTACTACTTTTACTGTCCAAGATGATAGAGAGAATCTGTATCAACTACACAAAAAGCTACAACTGCTTGGGGGGAGAGAATCAAGAACAGAAGAATTATTGGAAGGAAGTGTCATTAGTGATATAGAATGTGATGAGTTGACAATTGAGAAGTTGAAATCAGCACTAAAAGCTGAAAGAAAAGCTTTAAGTGCTCTATATGCAGAACTAGAAGAAGAGAGGAGTGCATCTGCAGTAGCCGCAAATCAAACAATGGCAATGATAAATAGGCTTCAGGAAGAGAAAGCTGCAATGCAGATGGAAGCTTTGCAGTATGAGAGAATGATGGAAGAACAATCTGAGTATGACCGGGAAGCTTTGCAGCTTTTGAATGAACTTATGATAAAGAGGGAAAAAGAAAATTTTGAACTAGAAAAGGAGCTTGAAATATATCAAAAAAAGGTTCATGAATACGAGGTTAGAGAAAAGATAATGTCAAGAAGGGAAAGTAATATAAGAAGCAAAACTTGTCCCTCATGCAGCAATGCTAGAGATAGTGATGGACTATCTATTGATTTTAGTCAAGATACAAAGGAAGAAAATGGTACTTATAGCCATCAAGAGTTTAGCAACCGGAACACTCCTGAAGATGCTGTTATATATTTGGAGGAATCATTGGCAAACTTTGAGGAAGAGAGGTTATTAATTCTAGAACAACTGAAGATGCTGGAAGAAAAGATTGCTATATTGAATTATGAAGAAGAGTATTTTGATGGTAATAAATCAATAGAAAATCTTTGTGAAGAGAATGGAAATGGTTACCAAGATCATAATGATCACATAGGTCATGTGAACGGATTATCAAATGGTAAGCATCATGATGGAAGGAAAACAATGTGTACAAAAGCCAAGAGGGTTCTCCCACTCTTTGATGCAACTGGCACAGAAGCAGAAAACAGGGCAATGAGTAGTGAGTTAGATTTTACTTCCTTGCAAAATAGTTCAGATGAGAAGGTTCAATTAGAGAAGAAAAAGCTTGATGTAGAAGTAGAGATGGATCATGTTTATGAGAGACTACTAGCTCTAGAAGCAGATAGAGAATTTCTAAAGCACTGTATCAGCTCCTTGGGGAAAGGGGACAAGGGGTTAGATCTTATCCAAGAAATTTTACAACATCTTCGTGATCTCAGGAATGTGGAACAAAGAATCAGGAACATGGGAGATATTGCTGTGTAA 2694 0.3857 MATNKFATMLHRNTNKITLVLVYAMLEWILIILLLLNSLFSYVIIKFVDYFGLKRPCIWCTRIDHIIEPENNKCSCRDLVCEAHAFEISKLGFCLNHRKLAESETMCVGCSSSCHPNFVNLSQTWMPQMGMIHDADDDNNKVLENGVEPLRCSCCGVNYVSKFYLIRDKPSLRVLDCTQKQNLITESGVESEIDEGHHHSDHGGDDFILDHLEEERNTVENKGSDIIVFDDDEGSGGGGKGANDVNICSVCDGAKETVCGEKYTFYLGIGKGQEETIREESLSVPKDVRSCEVITHQVACTSENTEQIPPKHLDFVIHGNDFFLIPVEFGDSFATERENQHMYMVGDDGLSGDEDVILDFDMNSGVEPEPVIENWHTFEDTVSVSSGPGCIKAFEAYGAESIPLRIRGKSLELIVEKESLEQKYQEVKFAQTTVDTGINGNVETNMKRYGELCSAVSQVATQMQGDELEAEVSTQYQDILEDSSQQIQVPSSITTTFTVQDDRENLYQLHKKLQLLGGRESRTEELLEGSVISDIECDELTIEKLKSALKAERKALSALYAELEEERSASAVAANQTMAMINRLQEEKAAMQMEALQYERMMEEQSEYDREALQLLNELMIKREKENFELEKELEIYQKKVHEYEVREKIMSRRESNIRSKTCPSCSNARDSDGLSIDFSQDTKEENGTYSHQEFSNRNTPEDAVIYLEESLANFEEERLLILEQLKMLEEKIAILNYEEEYFDGNKSIENLCEENGNGYQDHNDHIGHVNGLSNGKHHDGRKTMCTKAKRVLPLFDATGTEAENRAMSSELDFTSLQNSSDEKVQLEKKKLDVEVEMDHVYERLLALEADREFLKHCISSLGKGDKGLDLIQEILQHLRDLRNVEQRIRNMGDIAV 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00243 897 Coils Coil 574 647 - -
Cca06g00243 897 Coils Coil 817 837 - -
Cca06g00243 897 Pfam Zein-binding 544 634 IPR007656 -
Cca06g00243 897 ProSiteProfiles GTD-binding domain profile. 540 638 IPR007656 -
Cca06g00243 897 Coils Coil 542 569 - -
Cca06g00243 897 PANTHER MYOSIN-BINDING PROTEIN 2 1 894 IPR039306 GO:0017022
Cca06g00243 897 Coils Coil 712 732 - -
Cca06g00243 897 PANTHER MYOSIN-BINDING PROTEIN 2 1 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00243 Cca-Chr6 6225208 6229121 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00243 06 6225208 6229121 Cca06g00243 06 6225208 6229121 ECH