Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00241 ATGACCAAACCCAGCACCTTTTTTCATAACCTCATCAAGCCCTTCAAATTCACTTCCAATAAAGAAGGACAGAGCGAAGACGACATACAGAACTTAGCTTCCCAGGAGCAGAAGATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCTACGAAACATTGGTTGCTGCTACAAAGAATTTTCACATTCTTAATAAGCTTGGTGAGGGAGGATTTGGACCCGTCTATAAGGGGAAATTGAATGACGGGAGAGAGATTGCAGTGAAGAAGTTGTCGCATAGATCGAATCAAGGGAAGACGCAGTTCCTTAACGAGGCGAGGTTGTTGGCACGTGTGCAACACCGTAATGTGGTGAATTTGTTCGGTTATTGTACCCATGGCTCAGAGAAGCTTCTTGTTTACGAGTATGTCCCACGTGAGAGCCTTGACAAGCTTCTCTTCAAATCCCAGAAGAGAAAAGAGTTAGATTGGAAACGCAGATACGACATAATAAGCGGGGTGGCAAGGGGTTTGCTATATCTTCACGAAGACAGTCACAACTGCATAATCCACCGAGACATAAAGGCAAGTAACATCTTACTCGACCAAAAATGGCTTCCCAAGATCGCAGATTTCGGCCTCGCTCGCCTCTTCCCAGAAGACCAAACCCATGTCAACACACGTGTGGCTGGAACCAATGGGTATTTGGCTCCGGAATATTTGATGCATGGACATCTATCCGTGAAGGCAGACGTATTTAGCTATGGGGTTTTAGTGTTGGAGTTGATCACTGGCCACCGAAACTCATCCTTTCATTTGGACGTCAATGCACAAAATCTCCTCGATTGGGCATACAGGCTATACAAGAAGGGGAGGGCATTGGAGATGGTGGACCCCACATTGGCCTCTACAGTGGTAAACGAAGAAGCAAAAATGTGCATTCAACTGGGTCTGCTCTGCACTCAAGGCGATCCACAACAGCGTCCTACCATGGGGCGTGTGGTGGTCATGTTGTCAAGGAAACCAGGCCACATGGAAGAACCGGCAAGACCGGGAGTACCCGGTTCCAGGCTTAGAAGACTCTCTCCCAGACCCTTTCCTATGTCTTCCTCTACTATGGGATCTTCGCGAGATGTTGATGACACTTCTGGTTCCACCAACTATGCCTCTTCTGAAACGCCAACCACAAGCTCCAATGACACGCGAGGGAAACGACCCATGCAAGGTTAG 1278 0.4421 MTKPSTFFHNLIKPFKFTSNKEGQSEDDIQNLASQEQKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPYETLVAATKNFHILNKLGEGGFGPVYKGKLNDGREIAVKKLSHRSNQGKTQFLNEARLLARVQHRNVVNLFGYCTHGSEKLLVYEYVPRESLDKLLFKSQKRKELDWKRRYDIISGVARGLLYLHEDSHNCIIHRDIKASNILLDQKWLPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMHGHLSVKADVFSYGVLVLELITGHRNSSFHLDVNAQNLLDWAYRLYKKGRALEMVDPTLASTVVNEEAKMCIQLGLLCTQGDPQQRPTMGRVVVMLSRKPGHMEEPARPGVPGSRLRRLSPRPFPMSSSTMGSSRDVDDTSGSTNYASSETPTTSSNDTRGKRPMQG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00241 425 SMART serkin_6 84 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00241 425 Gene3D Phosphorylase Kinase; domain 1 54 159 - -
Cca06g00241 425 MobiDBLite consensus disorder prediction 381 425 - -
Cca06g00241 425 CDD STKc_IRAK 90 356 - -
Cca06g00241 425 MobiDBLite consensus disorder prediction 355 425 - -
Cca06g00241 425 PANTHER RECEPTOR-LIKE KINASE 3 388 - -
Cca06g00241 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cca06g00241 425 SUPERFAMILY Protein kinase-like (PK-like) 69 386 IPR011009 -
Cca06g00241 425 Coils Coil 32 39 - -
Cca06g00241 425 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 388 - -
Cca06g00241 425 ProSiteProfiles Protein kinase domain profile. 84 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00241 425 Gene3D Transferase(Phosphotransferase) domain 1 160 364 - -
Cca06g00241 425 Pfam Protein kinase domain 84 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00241 Cca-Chr6 6165674 6170855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00241 72 368 Receptor kinase-like Gene Family AT4G11530 53.177 1.25e-111 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca06g00241 Pkinase 4.7e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00241 06 6165674 6170855 Cca06g00241 06 6165674 6170855 ECH