Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca06g00240 | ATGACAACAACCCCTTTCCGCTTCTCTCTCTTACTCTTCACATTCACATACACATTCACGTTCTCCCGTTTCACCCCATCCGCCACCGCCGTCACCGCCGCACCCGACGCTTCCGGCGACATCGACTTCATCCGCGCAAGCTGCAACACCACGCTATACCCGGACCTCTGCTTCTCCTCCCTCTCACGCTTCGCCGCCGCGGTGCACCGCAGCCACGCTAACCTCGCCCGCGTGGCCGTCGCCGTCTCCCTCTCCAAGGCCCACGGCGCCGCCGCCTACCTCTCGCACCAGACCGCCGCCGCAGACTCGGAGTCCGGCGGAGGCGGCGGCGCCCTCCACGACTGCTTCGCGAACCTGGAGGACGCGGTGGACGAGATCCGCGGCTCGCTGAAGCAGATGCGGCGGCTCGGACCGGACTCCGAATCCGGTTCGGTCCGGTTCGGGCTGAGCAACGTGCTGACGTGGATGAGCGCCGCCCTGACCGACGAGGAAACGTGCACGGACGGGTTCGAGGGCGTACCGGAGGGTCCCGTGAAGACCAACGTATGCGATCGCGTCACCCGCGTGAAGAAGTTCACCAGCAACGCTTTGGCGCTCGTTAACGGTTTCGCTAATAACTTATAA | 624 | 0.6458 | MTTTPFRFSLLLFTFTYTFTFSRFTPSATAVTAAPDASGDIDFIRASCNTTLYPDLCFSSLSRFAAAVHRSHANLARVAVAVSLSKAHGAAAYLSHQTAAADSESGGGGGALHDCFANLEDAVDEIRGSLKQMRRLGPDSESGSVRFGLSNVLTWMSAALTDEETCTDGFEGVPEGPVKTNVCDRVTRVKKFTSNALALVNGFANNL | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca06g00240 | 207 | SMART | PMEI_2 | 39 | 199 | IPR006501 | GO:0004857 | |
| Cca06g00240 | 207 | Pfam | Plant invertase/pectin methylesterase inhibitor | 42 | 199 | IPR006501 | GO:0004857 | |
| Cca06g00240 | 207 | CDD | PMEI-like_3 | 46 | 205 | - | - | |
| Cca06g00240 | 207 | Coils | Coil | 116 | 136 | - | - | |
| Cca06g00240 | 207 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 40 | 203 | IPR035513 | - | |
| Cca06g00240 | 207 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 10 | 206 | - | - | |
| Cca06g00240 | 207 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN | 10 | 206 | - | - | |
| Cca06g00240 | 207 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 10 | 201 | IPR006501 | GO:0004857 | |
| Cca06g00240 | 207 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 42 | 203 | IPR035513 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca06g00240 | Cca-Chr6 | 6155386 | 6156315 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca06g00240 | 44 | 207 | Carbohydrate Esterase | AT5G53370 | 27.811 | 1.42e-13 | 67.0 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca06g00240 | 06 | 6155386 | 6156315 | Cca06g00240 | 06 | 6155386 | 6156315 | ECH |