Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00071 ATGGAAGAAGATGCTGGTAACTTGAAGGGTGAAGAGGCATTCAGGAAAACAAGGGTGCCACCATGGACAAATCAAATAACAGTGAGATCAGTGGTGACAAGCTTTGTCCTAAGTGTGATTTTCATCTTCATTGTGTGCAAGCTCAACTTCACAACAGGGATCATACCATCCCTCAATGTAGCTGCAGGCTTGTTGGGGTTTGCAGTGATCAAATCCTACACTACACTCCTCAACAAGTGTGGCCTTCTCAAACAACCCTTCACTCGCCAAGAGAACACTGTCATCCAAACTTTCGTTGTTGCGTCTTCTGGAATCGCATTCAGCAGTGGAACTGGAAGTTATCTACTTGGGATGAGCCCATACATTGCTTCTCAAGTTACTGAGGGCAACACACCAATCAATACAAAGAAACTCTCCCTTGGTTGGATGTTTGGTTTTCTCTTTGTTGTTAGCTTTGTGGGTCTCTTTTCCATTGTGCCTCTAAGAAAGCTGATGATTTTGAAGTACAAACTAACATACCCGAGTGGAACTGCCACGGCACTTCTTGTCAATAGCTTACACACACCCAAAGGAGCAAAGCTAGCAAAAAAACAGGTTGCTTTGCTCTTCAAAAGCTTTTGTGGAAGCTTTACATTTGCTTTTTTCCAGTGGTTTGTCACTGCAGGAGATGGTTGTGGGTTCAGCACTTTCCCCACTTTTGGTATCCAGGCTTACAGTAAAAGGTTCTACTTTGATTTCTCATCTACCTATGTTGGAGTTGGAATGATTTGCCCCTACTTGATCAATGTATCTTTGCTTCTCGGAGCTATAATTTCATGGGGTATTCTATGGCCCTGGATTGAGCAGAAGAAAGGAATCTGGTATAGCGCAGAGCTACCTGCTAGCAGTCTAAGTGGCCTCCAAGGATATAGGGTCTTCACAGCAATAGCTATGATGCTTGGTGACGGTCTTTACCATTGCATCAGCATGCTATTACGAGTTGCCTATAGTCTTGCCTCCCAATATGTTAAGTCAAAAGGGTCATCATCCTCTGTAAAGCCTGAAGATGTTGATCAAAACTCAAGTGATGATAACGTCGACACTCAACGTCGAACCGAGTATTTCTTGAAAGATGAGATACCCTCTTGGGTTGCAATCACTGGCtacattatccttgcagttatttccatcataaccgtgtcacaaatctttcctcaactgaaatggtaccatgtactcatatcttaccttattgctcctgtccttgccttttgtaatgcctatggatgtggcctcactgattggtctttggcatcaaactatggcaaagttgccatcattatattcagttcatgggttggcctagccaacggaggcataattgctggccttgtatcatgtggtgtcatgatgagcattgtttcaacagcttctgatttgatgcaagacttcaaaacggggtatctcacccttgcatctcctaggtccatgttcatgagccaagttttggggacagccacgggttgctttatgtctcctttgatcttttggttCTTCCACAAGGCCTACACAATCGGTGACCCTCTAGGCTCTTACCCTGCACCCTATGGAGAAGTGTACCGTGGGATGGCCCTTATTGGAGCAAAGGGTTTCTCTTCTCTTCCCAAACACTGTCTTCAACTAGCCATCACGTTCTTTTGCTTGGCTGTGTTTATTAACATAGTGCATGATTTGTTGGTGCAATATGAGACCAAGTATAGGATACATAGGTTTGTTCCAAACCCCATGGCCGTGGCCATTCCATTCTATCTTGGTGGGTATTTTGCTATTGACATGTGTGTTGGGAGCTTGATATTGTTTTTATGGGAGAAAAAGAACAAACACAAAGCAAAGGATTATGCTCCTGCCTTGGCATCTGGACTCATATGTGGTGATTCTTTGTGGAGTGTTCCTGCTGCTATACTGTCTCTTGCTGGAGCCAACCCTCCAATTTGCATGAAGTTCTTATCTAGTGCTGTCAATAAGAAGGTTGACACCTTCTTGAGTGGTGGTTCTTGA 2037 0.3554 MEEDAGNLKGEEAFRKTRVPPWTNQITVRSVVTSFVLSVIFIFIVCKLNFTTGIIPSLNVAAGLLGFAVIKSYTTLLNKCGLLKQPFTRQENTVIQTFVVASSGIAFSSGTGSYLLGMSPYIASQVTEGNTPINTKKLSLGWMFGFLFVVSFVGLFSIVPLRKLMILKYKLTYPSGTATALLVNSLHTPKGAKLAKKQVALLFKSFCGSFTFAFFQWFVTAGDGCGFSTFPTFGIQAYSKRFYFDFSSTYVGVGMICPYLINVSLLLGAIISWGILWPWIEQKKGIWYSAELPASSLSGLQGYRVFTAIAMMLGDGLYHCISMLLRVAYSLASQYVKSKGSSSSVKPEDVDQNSSDDNVDTQRRTEYFLKDEIPSWVAITGYIILAVISIITVSQIFPQLKWYHVLISYLIAPVLAFCNAYGCGLTDWSLASNYGKVAIIIFSSWVGLANGGIIAGLVSCGVMMSIVSTASDLMQDFKTGYLTLASPRSMFMSQVLGTATGCFMSPLIFWFFHKAYTIGDPLGSYPAPYGEVYRGMALIGAKGFSSLPKHCLQLAITFFCLAVFINIVHDLLVQYETKYRIHRFVPNPMAVAIPFYLGGYFAIDMCVGSLILFLWEKKNKHKAKDYAPALASGLICGDSLWSVPAAILSLAGANPPICMKFLSSAVNKKVDTFLSGGS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00071 678 Pfam OPT oligopeptide transporter protein 25 648 IPR004813 GO:0035673
Cca06g00071 678 MobiDBLite consensus disorder prediction 339 358 - -
Cca06g00071 678 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 21 647 IPR004813 GO:0035673
Cca06g00071 678 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL7-RELATED 5 664 - -
Cca06g00071 678 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 5 664 IPR045035 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00071 Cca-Chr6 1767820 1772276 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00071 06 1767820 1772276 Cca06g00071 06 1767820 1772276 ECH