Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00067 ATGGTGGAACTGCTAGATCATGTTGCGGTGAAGGTGCGGAAAATTGGTACGATGATGGGAGAAGGAAGAGAGCGATACTTCATACTTTGGAGTAAAGAGCAGAGCAGAGATAAACGAGCGTTTTGTGAAAGGGGGCTAAACAGTTATTTTTCTTATATTCTAGGTGGAGATGAAGATAGGAAGCAAGTGAGTGCAAAAAAGCGGAACAGAGATGAAGTTTCTGAGAAGATTAAGAATAAGGTGTCCCACTCTCAGCCAGTTGGAGGACGAAATGTGTGTAGCACTGAGCGCATTGCTTATCTTTTCCAGCAGGAGGCCGATACCCTAGCCAACCTAACCCCTAAAAGTTTCTCTTATTGTGTTCTGTTCCTGATGGACAACAATTCAGATCTCAAAATTGGTGCTATTGCAGAGCCACCTCCTCAAATCGGCGAGAACGAGAGTGAGAATGAAGATGAGAAGCAAGTGAGTGCAAAGAAGCAGAAGAGAGATGAGGTTGTTGAGGAGCAAGGGAATAACAACGAAATTATTTCAGATGATTCCTTTTCAGATTCTGAACCTAGAAAGCCTAAAATGCTAGCTACCCCGAATGAACAAAATGCTGGATCGAAGACAATATATACTAGAAACTTGTCTTACAGTGTGGAACGAACTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTTCATACGGATTATGAAGGGAGGTTTAGAGGCTTTGGACACGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTGAGTTGAATAATTTTGTATTGTTGCAACGTCGCATTGCAATTGGTATAGCTCGAGAAAGGGGAGAATATACCTCCAATAGAAGCAACTGGAACGACTTCCATAAGTGTGCAAGAAATCCGTCTCCAACTATATTTGTGAAGGGTTTCGATAGTTCCCTTCCGGAAGGAAAGATAAAAGCTAGCCTAGAAGAGCATTTTGGTTCTTGTGGAGAGATTGCAAGGATATCAGTTCCGGTATTTCATGATTCTGGTGCTGCTAAGGGGTTTGCTCACTTGGAGTTCAAGGATGTTAACAGTGCGAATAAAGCTCTACATCTTGATCAAACTGAGCTCGGAGGTTATCACTTGTTAGTTGAAAGAGCAAAGAAGACTCGACCTGATAACCAGGGTATAGGCAGTGACAGAGGTGGTGGCAGTCGTCATGAGTTTCGTAGATGGGATGGAAGTGGCTATAGCAGTAGAGCGGGTTGGGGAATAAGTGGCGGTGGTGGGTGGCATTCTTCATTTTCTGATGAAAACGCAGGGAGGAAGAACCACTTTTATTGA 1329 0.4319 MVELLDHVAVKVRKIGTMMGEGRERYFILWSKEQSRDKRAFCERGLNSYFSYILGGDEDRKQVSAKKRNRDEVSEKIKNKVSHSQPVGGRNVCSTERIAYLFQQEADTLANLTPKSFSYCVLFLMDNNSDLKIGAIAEPPPQIGENESENEDEKQVSAKKQKRDEVVEEQGNNNEIISDDSFSDSEPRKPKMLATPNEQNAGSKTIYTRNLSYSVERTDLEDLFKECGEIVDVRLHTDYEGRFRGFGHVEFATAEAAQKALELNNFVLLQRRIAIGIARERGEYTSNRSNWNDFHKCARNPSPTIFVKGFDSSLPEGKIKASLEEHFGSCGEIARISVPVFHDSGAAKGFAHLEFKDVNSANKALHLDQTELGGYHLLVERAKKTRPDNQGIGSDRGGGSRHEFRRWDGSGYSSRAGWGISGGGGWHSSFSDENAGRKNHFY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00067 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 376 IPR000504 GO:0003723
Cca06g00067 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 273 IPR000504 GO:0003723
Cca06g00067 442 MobiDBLite consensus disorder prediction 384 406 - -
Cca06g00067 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 304 442 - -
Cca06g00067 442 MobiDBLite consensus disorder prediction 147 170 - -
Cca06g00067 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 175 290 - -
Cca06g00067 442 Gene3D - 141 289 IPR012677 -
Cca06g00067 442 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 304 442 - -
Cca06g00067 442 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 175 290 - -
Cca06g00067 442 SUPERFAMILY RNA-binding domain, RBD 300 413 IPR035979 GO:0003676
Cca06g00067 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 384 IPR000504 GO:0003723
Cca06g00067 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 280 IPR000504 GO:0003723
Cca06g00067 442 MobiDBLite consensus disorder prediction 135 201 - -
Cca06g00067 442 SUPERFAMILY RNA-binding domain, RBD 195 292 IPR035979 GO:0003676
Cca06g00067 442 SMART rrm1_1 205 276 IPR000504 GO:0003723
Cca06g00067 442 SMART rrm1_1 304 380 IPR000504 GO:0003723
Cca06g00067 442 CDD RRM1_NUCLs 205 281 IPR034349 -
Cca06g00067 442 Gene3D - 290 419 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00067 Cca-Chr6 1620176 1657102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00067 196 365 Eukaryotic Initiation Factors Gene Family AT4G34110 28.736 1.60e-14 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00067 06 1620176 1657102 Cca06g00067 06 1620176 1657102 ECH