Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00058 ATGGATTGGAGAGAGaatagcaatagcaatagcaataacaatagcaatggcaatGGGTTTTACGATAGGTTCGTGTGTGATTATGACGAAGAGGTTCTCAGCAGAGAACGAAGCCCTAACAAGCCTTCTTCGCTCTCTTCCTCGCCTTCCAGACTTGGCTACATTGAACACCATGTTTCCAAATTCGATACCTTGGCTGGTGTCGCTATCAAGTACGGGGTTGAGGTTGCAGACGTCAAAAAGATGAATAGCCTTGTTACAGACCATCAAATGTTTGCACTTAAAACTCTCCAAATTCCACTTCCTGGAAGGCACCCTCCATCTCCTTGTTTATCAAATGGTTCCACTACACCAGGACACAGTAACTCAGATCACAGTCCACCTAGTCAGGCACACCGCGATCTGCTTGACACATTCCAGTCCCTGAGAATAAAGTCTTCAGAGCGGAAGGTCTCCCCAGCCATGAACTCATTACAGGGTTACTATGGACTTAGAACCTCAAGTCCCCCAGAAGATGGTCCATTCCCCAGAAACTTACCTATGACTGAGCGACCTCTGAGTCGTCACCGGAAGTCCAAGAGTTTGGTCAATGTAATTTTGGAAGGGATTATGGAAAAGTCTGATGGTTCACCAGCTGCAGAAACCAGGGAAGTTAACTCCAGTAAATGGAATGATAAGCTTGTCCAGAGACGTCAGAGATCTGTAGCCGACTTTTCCAGGATACCAGAGTTGCTTTTGAGGGAGGATAATAGTAGCATTGGTGGTCTTTCATCAAGAACAGGAAAGGGCTTAGCCCTAAGACCGAAAGCAGCTAGCCGAACTGCAGTGACAGCTGATTCTGAACCAATTGGTGTGAGTCCTGTGCAAATGGGCATGGGAGATGTTTCTCTAAATGATGGTTCATCTGCTGGGGTGAGGAAATCATCAAGTACTTCTTGTTTACAGGATCAAGATAACAGTGGCTCCTCATCCATTTGGCCAACCTCAATGTGGATTTTGAAACCAGACTTGCAGGCCCTTTCAACCGCAACCATTGGAAAACCAATCTTTGATGGCTTGCCCAAGCCATTAACTGGTCGAAAAAATAAAGCTGCACTTGATTAA 1104 0.4447 MDWRENSNSNSNNNSNGNGFYDRFVCDYDEEVLSRERSPNKPSSLSSSPSRLGYIEHHVSKFDTLAGVAIKYGVEVADVKKMNSLVTDHQMFALKTLQIPLPGRHPPSPCLSNGSTTPGHSNSDHSPPSQAHRDLLDTFQSLRIKSSERKVSPAMNSLQGYYGLRTSSPPEDGPFPRNLPMTERPLSRHRKSKSLVNVILEGIMEKSDGSPAAETREVNSSKWNDKLVQRRQRSVADFSRIPELLLREDNSSIGGLSSRTGKGLALRPKAASRTAVTADSEPIGVSPVQMGMGDVSLNDGSSAGVRKSSSTSCLQDQDNSGSSSIWPTSMWILKPDLQALSTATIGKPIFDGLPKPLTGRKNKAALD 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00058 367 MobiDBLite consensus disorder prediction 162 190 - -
Cca06g00058 367 ProSiteProfiles LysM domain profile. 55 99 IPR018392 -
Cca06g00058 367 SUPERFAMILY LysM domain 55 100 IPR036779 -
Cca06g00058 367 MobiDBLite consensus disorder prediction 297 325 - -
Cca06g00058 367 SMART LysM_2 56 100 IPR018392 -
Cca06g00058 367 MobiDBLite consensus disorder prediction 109 132 - -
Cca06g00058 367 PANTHER LOC443603 PROTEIN-RELATED 40 367 IPR045030 -
Cca06g00058 367 MobiDBLite consensus disorder prediction 103 132 - -
Cca06g00058 367 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 40 367 - -
Cca06g00058 367 Gene3D LysM domain 42 106 IPR036779 -
Cca06g00058 367 CDD LysM 63 99 IPR018392 -
Cca06g00058 367 MobiDBLite consensus disorder prediction 301 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00058 Cca-Chr6 1264388 1269849 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00058 06 1264388 1269849 Cca06g00058 06 1264388 1269849 ECH