Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00057 ATGCCTCCGCCGCGCCGACGCGGAGCGAACAAGGCCAAGGCCAATGGCAACTTGAGTTTGGGCGATCTCGTGCTCGCTAAGGTTAAGGGATTCCCGTTTTGGCCTGCCAAGATAAGCAGGCCCGAAGATCGGGAGAAAACCCCTGATCCAAAGAAATATTTTGTTCAATTTTATGGGACCAAGGAAATAGCTTTTGTTGCCCCTGCGGATATTCAGGCATTCACCATTGAGGCTAAAACTAAGTTGTCTGCTCGGTGTCAAGGAAAGACAAAATACTTTACTAAAGCCGTGAAGGAAATCTGCTCAGCATTTGAGGAGTTGGAGAAACAGAAAGCTAGTGGTTTGAAAGAGGACACTGATGATTCACATATTGGTTCAAGAACTCCTTCCGTTGATGGGGTAGTGGGTCACTTGAAGGATGCTACTGATGCTGTGGTATTCAACATTGAAAATGCTAACACATGTGTGGGAGATGTTGGCTCTAATTTGGAGCAAAGTACACAGAGATTTGAACAAAGTGGTAACCAAGTTGAAAAGCCTTCTGTATCTGGCCATCCAAATGACAGTTCATCTCCAGTCTTGTTGCCAGTGATTGAAATTAAACCATCAATTGGTGCAGCAGAACTTAATAAGTGTACTAGCAAATCTGACCTGGACGAACAATCATGTCTGAAAGTGGAAGTTTCTAATATTAAGGATGTTGGCAATGTTCATGACTTAAAGCAAGCTGATAATGAACAGAGTGTTTATACAAATGGGAACAGGTCAAGAAAGCTTGTTACTGGCTCAAAGAGAAGCAAAGGTGCAGATGATAGAAAAAGAAGCGGTGAAATTAGTAGAGTATCTTCAAAGGATGAAAATTGTGCAGTTTATACTAGTCTTTCCAGGTCTGGAGAGACAGTGAAAGATGGGAAAAAAGAGAAAAATGCATTTTCTGTTAAATCAAATTCTGCAGATGCTCTTAAATCAGACTCTGATATTAACAGGGTAAGTAAAGAAAAGAACTTTCTGAAAGTTAAAACTAGTCTTAAAGTTAAAAATGAGTTGCAGGAGAGCTTTGTTGGTTCTGAGGATGAGAGAAAAAAATCTTTTAAGCAAAACAAAAATCAACTTCATGGAAAACGTAATTTGGGAACAAATGAAACTTTACATGCTACCAAGAAGTTGAAGTGTATGGATATCAAAGACAATAAAACTTTAAAATCTCTCTCGGAAGGTGGGAAGAGTGATTCACCTAGCTCTCCTGTTGTTGATGACAAAGAATTCAAACAAATAGAGTTGAAAAGGTCTACATCACGATTGAAAACAGAGAAAGGTTTGCCATCAAGGGTTCAGACTAGTGTTGTAGGTTCTGATGATTCTGTTTGTGACCAGCAAGCTATGCCTGATTCTACTAGCATTGCTTGTGAACAAACACAAATGAGTTCTCTTAGACTGAAAGGTGACACAAATAATCTTACAATTAAACAAGTACAGAGGAGACGTAGAGCTGTTTGCCTtgttgattatgatgatgatgatgaCCACAATTCTCCTGTTCACAGAGGAGCTGCTGAAGATATTAAATCTCCTTTTGTTTCAGAGGTTTTGAAGAACAATGATGCATTCCTAGAGAACACTGATGCTGCTCAGTTGGATACCAGAAAACCTAGTGCACTTGAGGATAGCCATTTTAAAGAACCCTCTTCTGAATTATGTAATGACAATTTGCAAGTTGGACATCCTCAAAAAGAGGCTGAAGAAGTTATTCCTTTCCATTTACCTCATAGTCCTAGGAAATTAGATTCAAAGCTATTTTCTCCAAAGGTGGAAAAATTGAGCTCCACCTCTCTGGTAGATTCACCTCATTCAGTTCCTACAACAAAGTCAAATGCTGAGCAACATAAATTTTCCAAACGTATGCTTCAAGTTTCCAGTAATTCTACTCAAAAGAAGGCTGATAATGGATCTTCAAAGAATGTAAATAGCATCAGCTCTTCACAGTGTCAGGTCACTACTCATAAAAAGAAGCCTGCATCTTCAGGGGAAACTTCTAAAACCACTCCAAAGACATTACCACTGGAAGTTGAATTTCCTGCTAAAACAGAAAATTTAAAGGAATTTGATGTTTTTTGTGTTCATAGAATTGAGGTGGGCACAGAAGAAGAAAATAGTCTGTATACTGTTTCTAGGACTCCAGAAACTCCGAAGACTATGAAGCATCTTATTGCGGCTGCCCAGGCGAAAAGGAGACAAGTAGCTCAATCTCAATGTCATCCTCTTGATCTTTACAATACTCAAGGGGGAACTCCTAGCCCCTCTACAGTTCAGCCATTTCTATCCGTCTCCAGCAATTTTGGCCAGGCAGATTGGCCAATTGTTCATGAACACCCAACATTGGCTTCTCCATCAACTAATGGGTATCATTCCACTTCTCAAAGTCAACTTGATGATGAAGAAAACGAAGAGAAAAGAGTTAATTCAGTGCAAAGGGCTGTAGAGGGCTCTCTGAGTGGTGGTACTGAGGCTGCTGTTGCTCGTGATGCCTTTGAAGGAATGATAGAGACTTTGTCTAGGACCAAGGAAAGTATTGGGCGTGCAACACGTCTTGCCATTGATTGTGCCAAATATGGCATTGCCAATGAGGTTGTTGAACTTCTTATCCGAAAGCTGGAGATTGAAACTAGTTTTCATCGTAAAGTGGATTTATTTTTTCTTGTTGATTCCATCACCCAATGCTCACATAATCAAAAAGGCATTGCGGGAGCCTCCTACATCCCTACCGTTCAAGGAGGGCTGTCACGACTTCTTGGTGCGGCTGCTCCCCCAGGGGTTAGTGCTCGTGAAAATCGTCGTCAATGTCTCAAGGTTTTAAGGCTGTGGCTCGAGAGGAAAATTTTTCCTGAATCAGTTCTTCGCCGTTACATGGATGAAATTGGAGTTTCAAATGATGATATGACAGTTAGTTTTTCTTTCAGGCGTCCTTCCCGAGCAGAACGGTCTTTGGATGACCCAATTAGAGAAATGGAAGGCATGCTTGTTGATGAGTATGGAAGTAATGCTTCATTTCAGCTGCCTGGATTGTTATCTTCTCTGGTGTTTGAAGAAGATGAAGATGATGATTTTCTGAATAATGCATCTCCAGCAGATCCCACTCGCACTGTTGTGGATTCAGAAACTTCAACAGTTACCCCAACTGACAAGCGCCATTGTATCTTGGAGGATGTGGACGGTGAGCTGGAAATGGAAGATGTTTCAGTTCACCTAAAGGATGAAAGACCTGTATTATTGAACAGTCCTTCTGAAATGGATTCTCAACTTCAGGGCTTAGATAGGATTTTGGATCCAGCTTCAGACATTTCTGCCGAGATACCTGATATTCTTGAGGGTTCTCCTCCATTGCCACTTGGTTCACCCCCTTCTCTCCCGCCTTTGCCTTCTTcacctccaccaccactacctccattatctccatcgcctccccctcccccaccaccccaAGTGTTGCAACACCCACCTCCTCCTTTGCCAGCCCCAGGCCCTCCACCTTCACTGATTCCTCAATCATCTGGACCTGTTCAGCCTCCACTTTTATCCCAGACATTAGTTCCACCTCAATCATTGCATCAGTCATCACCATTGTCAGGGTATCAGCAGAGTGTACCTCATGATTTTAGTGGCTCAACTAATGGCAACCAAATAGTTCAAGTGGCTGTAAATTCTTTTCCTGGAGGTCACAATAGTTCAGTGGTCAAGAATGAAATATTGCAACAACCATCTGCTTGCTTTACTCCAATGGCAGGCTGCAACTCTCAGGAACCTTCTGGTTTTAACCCTCCAAGGCAGTTGGAATATGGACAAAAGGATATGTATCTAAATTCTCAAGGTCCTCAACCTAATCTGCAATTTCAGCCGGTTAACCCATCATTTGCTCCAAGGCACATGCATCCTGCCCCACCCCAAAATCCATCCAATCAATATTCTTATCCAAAGCCTACAATTCAGCAGCAGCTTCCACATTCTTTCCATCCTCCATTCTCATTGCCATCACTTCCAGATGGCCAGAGGCAATTTGTTGCTAATGAGCAATGGAGGATGTCAACAAGTGAATTTAAAACAAACCATCAACAGGGTCTAAGGATAGGGAGAAATCCTTCATACCCTGGTACTCCCTTTGCACAGGAAGGTTATTTTCGGCCACCACTTGAAAGACCACCAATAAACAATGTAGGTTTCCAGCATGCAAACCCTAGCAGCATGCCTGCTCCTCCTATGACAGGACATGGTGTTCCTCAAATGTTGTCTTGTAGGCCAGATATTCCTGCACTTAGTTGTTGGAGGCCTACTTGA 4329 0.4116 MPPPRRRGANKAKANGNLSLGDLVLAKVKGFPFWPAKISRPEDREKTPDPKKYFVQFYGTKEIAFVAPADIQAFTIEAKTKLSARCQGKTKYFTKAVKEICSAFEELEKQKASGLKEDTDDSHIGSRTPSVDGVVGHLKDATDAVVFNIENANTCVGDVGSNLEQSTQRFEQSGNQVEKPSVSGHPNDSSSPVLLPVIEIKPSIGAAELNKCTSKSDLDEQSCLKVEVSNIKDVGNVHDLKQADNEQSVYTNGNRSRKLVTGSKRSKGADDRKRSGEISRVSSKDENCAVYTSLSRSGETVKDGKKEKNAFSVKSNSADALKSDSDINRVSKEKNFLKVKTSLKVKNELQESFVGSEDERKKSFKQNKNQLHGKRNLGTNETLHATKKLKCMDIKDNKTLKSLSEGGKSDSPSSPVVDDKEFKQIELKRSTSRLKTEKGLPSRVQTSVVGSDDSVCDQQAMPDSTSIACEQTQMSSLRLKGDTNNLTIKQVQRRRRAVCLVDYDDDDDHNSPVHRGAAEDIKSPFVSEVLKNNDAFLENTDAAQLDTRKPSALEDSHFKEPSSELCNDNLQVGHPQKEAEEVIPFHLPHSPRKLDSKLFSPKVEKLSSTSLVDSPHSVPTTKSNAEQHKFSKRMLQVSSNSTQKKADNGSSKNVNSISSSQCQVTTHKKKPASSGETSKTTPKTLPLEVEFPAKTENLKEFDVFCVHRIEVGTEEENSLYTVSRTPETPKTMKHLIAAAQAKRRQVAQSQCHPLDLYNTQGGTPSPSTVQPFLSVSSNFGQADWPIVHEHPTLASPSTNGYHSTSQSQLDDEENEEKRVNSVQRAVEGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLEIETSFHRKVDLFFLVDSITQCSHNQKGIAGASYIPTVQGGLSRLLGAAAPPGVSARENRRQCLKVLRLWLERKIFPESVLRRYMDEIGVSNDDMTVSFSFRRPSRAERSLDDPIREMEGMLVDEYGSNASFQLPGLLSSLVFEEDEDDDFLNNASPADPTRTVVDSETSTVTPTDKRHCILEDVDGELEMEDVSVHLKDERPVLLNSPSEMDSQLQGLDRILDPASDISAEIPDILEGSPPLPLGSPPSLPPLPSSPPPPLPPLSPSPPPPPPPQVLQHPPPPLPAPGPPPSLIPQSSGPVQPPLLSQTLVPPQSLHQSSPLSGYQQSVPHDFSGSTNGNQIVQVAVNSFPGGHNSSVVKNEILQQPSACFTPMAGCNSQEPSGFNPPRQLEYGQKDMYLNSQGPQPNLQFQPVNPSFAPRHMHPAPPQNPSNQYSYPKPTIQQQLPHSFHPPFSLPSLPDGQRQFVANEQWRMSTSEFKTNHQQGLRIGRNPSYPGTPFAQEGYFRPPLERPPINNVGFQHANPSSMPAPPMTGHGVPQMLSCRPDIPALSCWRPT 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00057 1442 CDD HDGF_related 16 103 IPR035496 -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 355 377 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 166 193 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 548 562 - -
Cca06g00057 1442 Pfam PWWP domain 21 104 IPR000313 -
Cca06g00057 1442 Pfam CID domain 842 966 IPR006569 -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 401 422 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 1040 1055 - -
Cca06g00057 1442 ProSiteProfiles PWWP domain profile. 20 66 IPR000313 -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 1036 1055 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 792 807 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 607 683 - -
Cca06g00057 1442 Gene3D - 10 114 - -
Cca06g00057 1442 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1442 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 243 281 - -
Cca06g00057 1442 SMART PWWP_4 18 75 IPR000313 -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 1118 1222 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 542 570 - -
Cca06g00057 1442 PANTHER PROTEIN HUA2-LIKE 1 1 1442 - -
Cca06g00057 1442 Gene3D - 834 979 IPR008942 -
Cca06g00057 1442 ProSiteProfiles CID domain profile. 835 976 IPR006569 -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 1125 1183 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 808 822 - -
Cca06g00057 1442 SUPERFAMILY Tudor/PWWP/MBT 15 111 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 243 259 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 1184 1222 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 263 281 - -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 166 190 - -
Cca06g00057 1442 SMART 558neu5 842 973 IPR006569 -
Cca06g00057 1442 MobiDBLite consensus disorder prediction 790 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00057 Cca-Chr6 1229189 1243504 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00057 06 1229189 1243504 Cca06g00057 06 1229189 1243504 ECH