Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00047 ATGATCTCTTTCTCTACTCTCACCAACATGATGGCCAGcttctacttcttcttcttattttctctcttgcaacatcttcacttcttGGAACTCACCATTGCTGCCACCGTTTTCTTAGCCCTTCAACTTTTCATCTCAAAGAGGCACCATGGCCTACCCATTTGGCCAATCCTCCGAATGCTACCTTCCCTTCTCTCAGGCCTCAGAACCAACCTCTATGAATGGCTCACCCAAGTCCTCATCCGCCAAAATGGAACCTTCACATTCCATGGCCCTTGCTTCACTAGCCTCAACTGCGTCATCACCTCAGACCCTCGCAACATCGAGCACCTCCTCAAAACCAACTTCTCCTCCTTCCCTAAGGGAAGATTCTTCAGGTACACGCTTCGTGACCTGCTAGGAGATGGCATATTCAACTCAGACAACGAAGCATGGCAGCGACAAAGGAAAACGGCGAGCCTCGAGTTCCACTCAGCCAAGTTCAGAAACCTAACCGCAGAGTCCCTATTGGAGCTTGTCCACAATAGACTCTTACCTCTACTGGAATCATGCGTCACCGAATCACGCGTCATCGACCTTCAAGAAGTGTTGCTGAGGCTAACATTCGATAACGTGTGCATGATAGCTTTCGGTGTAGACCCCGGTTGCTCGCAGCCCCACATGCCGGAGATTCCGTTCGCGACGGCGTTCGAGGACGCGACGGAGACCTCGATGAGGAGGTTCGTGACCCCGGTGTGGCTGTGGAAGTTGATGAGGCGCCTCAACGTGGGGGTGGAGAAGAGGCTGAAGGAGTCCATAAAGAGGGTTGATGAGTTTGCTGAGAGTGTTATCAGGGCGAGGAAGGAGGAGCAGCGTGAAGATGATGAAGAGAAGTGTGACTTGTTGACGGTGTTCATGAGGCTCAAGGATGAGAATGGAGAAGCTTACTCTCATAAATTTCTGAGGGACATTTGTGTGAACTTCATATTGGCGGGGAGGGACACTTCTTCTGTGGCTTTGAGCTGGTTTTTCTGGCTTCTGCATCAGAATCATCAAGTGGAGGAGAAGATTGTGGGTGAGATTTGTAGGGTGGTGAGCGAGAGAGAGGGGTTCAAGAAGGAAGAGATTCATGGTTTGGCTTTCAGGAGTGAGGAGATAAAGAAGATGGATTATCTGCATGCTGCACTTTCGGAAGCTCTAAGGTTATATCCTTCTGTGCCTGTGGATCACAAGGAGGTGATGGAGGATGTGACTCTGCCAAATGGAACAGTGCTAAAGAAAGGGACAAAGGTGATATATGCAATTTATGCAATGGGGAGAATGGAAAGCATATGGGGGAAGGATTGCAAGGAGTTCAAGCCAGAAAGGTGGCTGAGAAATGGAAGGTTCGTGAGTGAGTCTGCATACAAATTCAGTGCCTTCAATGGAGGACCTCGCTTGTGCTTAGGCAAGGATTTTGCATACTATCAGATGAAATATGCTGCAGCCAGCATCATATTCCGCTACCATGTTAAGGTGGTCGAGAATCACCATGTGGTGCCAAAGCTTGCTTTGACCCTCTACATGAAGCATGGATTGAAAGTCAACCTTCACAGGCGTGGTGTGGCAGAAATTGAGAAGCACTTCAATGTTTGA 1614 0.4783 MISFSTLTNMMASFYFFFLFSLLQHLHFLELTIAATVFLALQLFISKRHHGLPIWPILRMLPSLLSGLRTNLYEWLTQVLIRQNGTFTFHGPCFTSLNCVITSDPRNIEHLLKTNFSSFPKGRFFRYTLRDLLGDGIFNSDNEAWQRQRKTASLEFHSAKFRNLTAESLLELVHNRLLPLLESCVTESRVIDLQEVLLRLTFDNVCMIAFGVDPGCSQPHMPEIPFATAFEDATETSMRRFVTPVWLWKLMRRLNVGVEKRLKESIKRVDEFAESVIRARKEEQREDDEEKCDLLTVFMRLKDENGEAYSHKFLRDICVNFILAGRDTSSVALSWFFWLLHQNHQVEEKIVGEICRVVSEREGFKKEEIHGLAFRSEEIKKMDYLHAALSEALRLYPSVPVDHKEVMEDVTLPNGTVLKKGTKVIYAIYAMGRMESIWGKDCKEFKPERWLRNGRFVSESAYKFSAFNGGPRLCLGKDFAYYQMKYAAASIIFRYHVKVVENHHVVPKLALTLYMKHGLKVNLHRRGVAEIEKHFNV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00047 537 Pfam Cytochrome P450 98 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Cca06g00047 537 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 Gene3D Cytochrome P450 47 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS E-class P450 group I signature 386 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00047 537 PANTHER CYTOCHROME P450 18 527 - -
Cca06g00047 537 PANTHER BNAC02G41740D PROTEIN 18 527 - -
Cca06g00047 537 SUPERFAMILY Cytochrome P450 49 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00047 Cca-Chr6 1050768 1054679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00047 22 535 Cytochrome P450 AT5G23190 68.340 0.0 738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00047 06 1050768 1054679 Cca06g00047 06 1050768 1054679 ECH