Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00431 ATGAGCTGCTTTTGTTCTCGTGGGAAGGGTGTGGGCGTTGATCATATAGGGACGACAAAGCCAAATTCAAGGAAAGGGAGAGGCACAGCCTCGAGTTTCAGTTTTCGCGAGCTTACATCGGCATCCAGGGGTTTCAAGGAAGTCAATTTGATCGGTGAAGGAGGTTTTGGAAAGGTTTACAAGGGCCAACTCTCCACAGGCCAGCTTGTTGCTATCAAACAATTGCGTCTAGATGGTGATGGCCATCAAGGTAATCGCGAATTTGTCACCGAGGTTCTTATGCTAAGCCTCCTTCATCATTCTAATCTCGTCAAATTAATCGGCTACTGCACCCATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTAAGGGAAGCCTCGAACATCATCTTTTCGATACTAACCTAGAGAGAAAACCACTAAGCTGGAAAACTCGACTGAACATTGCTGTGGGTGCTGCGCGGGGCCTCCAGTATCTCCATTGTTCAGCGAATCCACCTGTTATCTATCGGGACTTGAAATCTGCCAACATCTTATTAGACGATGATTTGAACCCTAAACTCTCGGATTTTGGGCTTGCTAAGCTAGGACCTGTTGGAGACAATACCCATGTTTCCACAAGAGTCATGGGAACATATGGCTATTGTGCCCCCGAGTACGCCATGAGTGGCAAATTAACCCTTAAATCTGATATCTACAGCTTTGGTGTCGTCTTGCTAGAGTTGATCACCGGACGTAAGGCAATGGATGTCGCTAGAAAACCACGCGAGCAAAGCCTCGTTGCATGGTCTCGGCCATTTTTGGGTGACCGGAGAAAGCTTTCGCAAATGGTTGACCCTCTATTGCAAGGAAACTACCCGATACGTTGTTTGCACAATGCAGTCGCTATAACTGCCATGTGTCTTCAGGAGAAACCGAATCTTCGTCCATCCATTGGTGATATTGTTGTTGCATTGGAGTACTTGGCCTCTGAAAGTGTTTCTGAAGTCCACAGGCGAGGACATGCCATGCGCAGCCCACTCCAGCAACCAACACCAAAAacagatacagatacagatactgatacagataGAAACCAGAATTAA 1089 0.4564 MSCFCSRGKGVGVDHIGTTKPNSRKGRGTASSFSFRELTSASRGFKEVNLIGEGGFGKVYKGQLSTGQLVAIKQLRLDGDGHQGNREFVTEVLMLSLLHHSNLVKLIGYCTHGDQRLLVYEYMPKGSLEHHLFDTNLERKPLSWKTRLNIAVGAARGLQYLHCSANPPVIYRDLKSANILLDDDLNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAMDVARKPREQSLVAWSRPFLGDRRKLSQMVDPLLQGNYPIRCLHNAVAITAMCLQEKPNLRPSIGDIVVALEYLASESVSEVHRRGHAMRSPLQQPTPKTDTDTDTDTDRNQN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00431 362 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Cca05g00431 362 SUPERFAMILY Protein kinase-like (PK-like) 28 321 IPR011009 -
Cca05g00431 362 MobiDBLite consensus disorder prediction 333 362 - -
Cca05g00431 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Cca05g00431 362 SMART serkin_6 45 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00431 362 PANTHER OS07G0668900 PROTEIN 24 344 - -
Cca05g00431 362 PANTHER OS07G0668900 PROTEIN 24 344 - -
Cca05g00431 362 Gene3D Transferase(Phosphotransferase) domain 1 123 341 - -
Cca05g00431 362 CDD STKc_IRAK 51 321 - -
Cca05g00431 362 PIRSF ILK 9 338 - -
Cca05g00431 362 ProSiteProfiles Protein kinase domain profile. 45 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00431 362 Pfam Protein kinase domain 45 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00431 362 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00431 Cca-Chr5 9464137 9465909 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca05g00431 Pkinase 2.3e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00431 05 9464137 9465909 Cca05g00431 05 9464137 9465909 ECH