Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00428 ATGGAATTTGCAGCAGGACCGTCTATGCAGATGCAAGTTGTCAAGGCGCTCTGCTCGGGCAAGAGAAGGAAGGCTTCGGAGTTGCTTGAAGATTTTGATTCCAGAAATCACTCATTAACAGCTGATGATTTTGTTGATATTTTTAAGTACTGTGCACGCTCTCCTGATCCACTGTTTGTTATGGAGCTTTGGAGATTCATGGAGTTAAAAGGTGTGAGCATGAACAACATATGCTCATCTCTCATGATGCAGGCCCTTTGTAAAGGGGGTTACTTGAAAGAGGCCTTTGATATCATGGATTTACTTGGAGAAAGTCAATGTCTCTATCCAGTTCTCCCACTGTACAATAGTCTCTTAAGATCCTGCACGAAAATGCGGAGTATAATTCAAGCAAGCAAATGTTTGAACTTAATGGAAAAGAAGTTGGTAGGAAAGAATGAAGTTACATATACTGAGCTTCTCAAGCTTGCAGTGTTGCAGAATAACTTCTCTGCAGCCCATCTCATTTGGAAGGAGTATATTAAAAACTATACCACGAGTATCATTGCTCTGCGTAGATTCATTTGGTCATTTACAAAGTTAGGAGATTTAAAATCTGCATATAATATGCTACAACAAATAGTGTCATTAGCCATCAGGGGGAACATTTCTATTGGTAGAACAGTTTATGGGAAGTTGTATTCTACTAGATTGGACATTCCCGTGCCTTCAAATAAGGGGCTAGGCTCAACCATATTGGACTTGAAGGATAACAAAAAATTGGACTCTTGTATTCACCCTCCTCTTGTGAATTTACCTGACAGTATATCTGCAAGTATAGGGCAACAGATTGCTTGTGTGGGGAATAAAAAAGCAAAGAGTGCTGAATCAGATGGTCTGAATGGACAAAAACACTCTCTACTTATGAAGGTATTGAGGTGGTCCTTTAATGATATAATACACGGGTGTGCAAAACAAAAGAATTATATGCTTGCAAGGAAGCTTATGTTACAGATGGAAAATCTTGGTTTGCAGCCATCCAGCCATACGTATGATGGCTTTATTAAAGCAGTTGTTTCTCATAGAAGTTTTGTGGATGTCATAGGAGTGTTGGAGAAAATGCAGCAGAAGAATTTGAAGCCATATGATTCAACTCTAGCGACACTTTCAATCACTTGCAGCAAAGCGCTACAACTAGATTTAGCCGAGGCTTTGCTGAATAAGATTGCTGAATGTCAATGTCCACATCCTTATAATGTTTTGTTAGCATCATGTGATGCACTGAATCAACCTGAACGTGCTCTGCGAGTGTTTGCCAAGATGAAGCAGAATTTATTTTTACCTAATATCAGGACATACGAGCTTCTATTTTCGTTATTTGGTGTTGTAAATGCCCCGTATGAAGACAGTAATATACTGTCACAGGTGGATACTGCTAAAAGAATAAATGCTATAGAAAAGGATATGGCCAAAAATGGCATTCACCACAGTTATCTTTCAATGAGAAATTTATTGAGAGCCCTTGGAGAAGAAGGGATGGTAACAGAGCTGATCCAGTATTTACAGGTGGCGGAGAATCTTTTCATCTATAGAAACCCTTCATTGGGAAAACATATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAAAAGAGTAGCTTGGCGATTGCAATTTTCAAGAGGATGAAGTTAATTGGCAGCCCCCCTGATTCTGAAACATACAATATAATGATTGACTGTTGTAGCATCACAGAATGTTACAGATCTGCATGTTTGCTGATGGCAATGATGATACGGAAAGGGTTTTGTCCAGTGACTTGTACATATACTGCCATCATTAAGATTTTGTTGCAAGATGAGAACTTTAATGAAGCCCTGAATATTTTGAAACAAGTTATATTGGATGGCATCCAACCTGATGTACTGCTGTTTAATACTTTTCTTAAAGAAGCATGTTACAAGGAAAGGATTGATGTAATTGAGTTTATTGTGGAGTGTATGCACCGAGAGAAAGTTCCCCCTGATTCAGCAACATGCGGCTATGTCTTCTCTGCCTATGTAAATTCTGGATTTTACAATACAGCAATTGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCTGAAGATGGAAACATACTTAGAGAGAAGAAAAATTTTGTGAATGAATTCATACTATCTGAAGATTTGAATGTTGAGTCACAGATACTTAAATTATTTGAAGATTCTGAAGATGAACTTGCTGTTGGGTTGTTGAATTTAAGATGGTGTGCCGTAGCTGGATTCCCAATCTGTGAGTCAGCTGATCAAAGCCTATGGGCTAAAAGACTGGAAAGGATGCAATTGTGA 2331 0.3852 MEFAAGPSMQMQVVKALCSGKRRKASELLEDFDSRNHSLTADDFVDIFKYCARSPDPLFVMELWRFMELKGVSMNNICSSLMMQALCKGGYLKEAFDIMDLLGESQCLYPVLPLYNSLLRSCTKMRSIIQASKCLNLMEKKLVGKNEVTYTELLKLAVLQNNFSAAHLIWKEYIKNYTTSIIALRRFIWSFTKLGDLKSAYNMLQQIVSLAIRGNISIGRTVYGKLYSTRLDIPVPSNKGLGSTILDLKDNKKLDSCIHPPLVNLPDSISASIGQQIACVGNKKAKSAESDGLNGQKHSLLMKVLRWSFNDIIHGCAKQKNYMLARKLMLQMENLGLQPSSHTYDGFIKAVVSHRSFVDVIGVLEKMQQKNLKPYDSTLATLSITCSKALQLDLAEALLNKIAECQCPHPYNVLLASCDALNQPERALRVFAKMKQNLFLPNIRTYELLFSLFGVVNAPYEDSNILSQVDTAKRINAIEKDMAKNGIHHSYLSMRNLLRALGEEGMVTELIQYLQVAENLFIYRNPSLGKHMYNTVLHYLVEAKKSSLAIAIFKRMKLIGSPPDSETYNIMIDCCSITECYRSACLLMAMMIRKGFCPVTCTYTAIIKILLQDENFNEALNILKQVILDGIQPDVLLFNTFLKEACYKERIDVIEFIVECMHREKVPPDSATCGYVFSAYVNSGFYNTAIEALQVLSLRMMSEDGNILREKKNFVNEFILSEDLNVESQILKLFEDSEDELAVGLLNLRWCAVAGFPICESADQSLWAKRLERMQL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00428 776 Pfam PPR repeat family 531 575 IPR002885 -
Cca05g00428 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Cca05g00428 776 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 773 - -
Cca05g00428 776 Pfam Pentatricopeptide repeat domain 411 454 IPR002885 -
Cca05g00428 776 Pfam Pentatricopeptide repeat domain 590 643 IPR002885 -
Cca05g00428 776 Pfam Pentatricopeptide repeat domain 309 352 IPR002885 -
Cca05g00428 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Cca05g00428 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Cca05g00428 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cca05g00428 776 Gene3D Tetratricopeptide repeat domain 409 533 IPR011990 GO:0005515
Cca05g00428 776 Gene3D Tetratricopeptide repeat domain 534 729 IPR011990 GO:0005515
Cca05g00428 776 Gene3D Tetratricopeptide repeat domain 15 213 IPR011990 GO:0005515
Cca05g00428 776 Gene3D Tetratricopeptide repeat domain 302 408 IPR011990 GO:0005515
Cca05g00428 776 Pfam PPR repeat 80 105 IPR002885 -
Cca05g00428 776 Pfam PPR repeat 115 141 IPR002885 -
Cca05g00428 776 TIGRFAM PPR: pentatricopeptide repeat domain 601 635 IPR002885 -
Cca05g00428 776 TIGRFAM PPR: pentatricopeptide repeat domain 567 598 IPR002885 -
Cca05g00428 776 TIGRFAM PPR: pentatricopeptide repeat domain 532 558 IPR002885 -
Cca05g00428 776 TIGRFAM PPR: pentatricopeptide repeat domain 308 340 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00428 05 9392832 9406885 Cca05g00428 05 9392832 9406885 ECH